Stephanie Mounaud

A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analyses

Hong Liu, William C. Nierman, Jyoti Shankar, 2015, BMC Bioinformatics.

Large-Scale Transcriptional Response to Hypoxia in Aspergillus fumigatus Observed Using RNAseq Identifies a Novel Hypoxia Regulated ncRNA

W. Nierman, S. Pakala, B. Barker, 2014, Mycopathologia.

Annotated Genome Sequence of Aspergillus tanneri NIH1004

S. Seyedmousavi, W. Nierman, Indresh Singh, 2020, Microbiology Resource Announcements.

Characterization of Pneumococcal Colonization Dynamics and Antimicrobial Resistance Using Shotgun Metagenomic Sequencing in Intensively Sampled South African Infants

H. Zar, W. Nierman, M. Wright, 2020, Frontiers in Public Health.

Longitudinal changes in the nasopharyngeal resistome of South African infants using shotgun metagenomic sequencing

H. Zar, W. Nierman, M. Wright, 2020, PloS one.

Looking Beyond Respiratory Cultures: Microbiome‐Cytokine Signatures of Bacterial Pneumonia and Tracheobronchitis in Lung Transplant Recipients

Kevin J. McHugh, J. Alcorn, W. Nierman, 2016, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort

H. Zar, N. Mulder, W. Nierman, 2018, Scientific Reports.

Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus’s Role in Virulence

W. Nierman, S. Pakala, V. Joardar, 2015, PLoS pathogens.

Genetic diversity of clinical and environmental Mucorales isolates obtained from an investigation of mucormycosis cases among solid organ transplant recipients

Carlene A. Muto, W. Nierman, C. Dupont, 2020, Microbial genomics.

Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort

H. Zar, W. Nierman, S. Gardner-Lubbe, 2023, Microbiome.

Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract

W. Nierman, Hong Liu, S. Filler, 2015, Scientific Reports.

Strain Level Streptococcus Colonization Patterns during the First Year of Life

G. Sutton, M. Lucero, S. Madhi, 2017, Front. Microbiol..

Succession and determinants of the early life nasopharyngeal Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort microbiota in a South African birth cohort

H. Zar, W. Nierman, S. Gardner-Lubbe, 2022 .