Amartya Sanyal

发表

The accessible chromatin landscape of the human genome

Nathan C. Sheffield, Shane J. Neph, Matthew T. Maurano, 2012, Nature.

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

Raymond K. Auerbach, William Stafford Noble, Stephen C. J. Parker, 2011, PLoS biology.

A User ' s Guide to the Encyclopedia of DNA Elements ( ENCODE )

Z. Weng, J. Dekker, B. Lajoie, 2017 .

An integrated encyclopedia of DNA elements in the human genome

Melissa C. Greven, E. Birney, Z. Weng, 2014 .

Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment

Jennifer E. Phillips-Cremins, James Taylor, J. Dekker, 2013, Cell.

The long-range interaction landscape of gene promoters

J. Dekker, B. Lajoie, A. Sanyal, 2012, Nature.

From cells to chromatin: capturing snapshots of genome organization with 5C technology.

Josée Dostie, Job Dekker, J. Dekker, 2012, Methods.

Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma.

D. Postma, J. Stamatoyannopoulos, E. Silverman, 2016, American journal of respiratory and critical care medicine.

Patterns of Growth and Decline in Lung Function in Persistent Childhood Asthma.

D. Postma, J. Stamatoyannopoulos, E. Silverman, 2016, The New England journal of medicine.

My5C: web tools for chromosome conformation capture studies

Job Dekker, Bryan R Lajoie, J. Dekker, 2009, Nature Methods.

An encyclopedia of mouse DNA elements (Mouse ENCODE)

Philip Cayting, Katrina Learned, Daniel Blankenberg, 2012, Genome Biology.

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

Howard Y. Chang, Kevin C. Wang, Ryan A. Flynn, 2011, Nature.

SETDB1 acts as a topological accessory to Cohesin via an H3K9me3-independent, genomic shunt for regulating cell fates

Hu Li, H. Ng, J. Chu, 2022, Nucleic acids research.

Identification and utilization of copy number information for correcting Hi-C contact map of cancer cell lines

Anupam Chattopadhyay, Amartya Sanyal, Ahmed Ibrahim Samir Khalil, 2019, BMC Bioinformatics.

Cis- and Trans-chromosomal Interactions Define Pericentric Boundaries in the Absence of Conventional Heterochromatin

A. Sanyal, K. Sanyal, Yao Chen, 2019, Genetics.

DNA replication initiator proteins facilitate CENPA loading on early replicating compact chromatin

A. Sanyal, R. Siddharthan, K. Sanyal, 2018, bioRxiv.

Chromatin globules: a common motif of higher order chromosome structure?

M. Martí-Renom, J. Dekker, A. Sanyal, 2011, Current opinion in cell biology.

Mapping chromatin interactions with 5C technology: 5C; a quantitative approach to capturing chromatin conformation over large genomic distances

J. Dekker, A. Sanyal, J. Dostie, 2013 .

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules

J. Lawrence, E. Capriotti, M. Martí-Renom, 2011, Nature Structural &Molecular Biology.

Hierarchical discovery of large-scale and focal copy number alterations in low-coverage cancer genomes

Anupam Chattopadhyay, Amartya Sanyal, Ahmed Ibrahim Samir Khalil, 2019, BMC Bioinformatics.

Spatial proximity of homologous centromere DNA sequences facilitated karyotype diversity and seeding of evolutionary new centromeres

G. Butler, A. Sanyal, K. Sanyal, 2020 .

Spatial inter-centromeric interactions facilitated the emergence of evolutionary new centromeres

G. Butler, A. Sanyal, K. Sanyal, 2020, bioRxiv.

Analysis of Aneuploidy Spectrum From Whole-Genome Sequencing Provides Rapid Assessment of Clonal Variation Within Established Cancer Cell Lines

A. Chattopadhyay, A. Sanyal, A. I. S. Khalil, 2021, Cancer informatics.

Aneuploidy Spectrum Analysis as a Primer for Copy Number Profiling of Cancer Cells

A. Chattopadhyay, A. Sanyal, A. I. S. Khalil, 2019, bioRxiv.

Long noncoding RNA programs active chromatin domain to coordinate homeotic gene activation

Howard Y. Chang, Kevin C. Wang, Ryan A. Flynn, 2013 .

Patterns of Growth and Decline in Lung Function in Persistent Childhood Asthma.

D. Postma, J. Stamatoyannopoulos, E. Silverman, 2016, The New England journal of medicine.

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules

J. Lawrence, E. Capriotti, M. Martí-Renom, 2011, Nature Structural &Molecular Biology.

The long-range interaction landscape of gene promoters

J. Dekker, B. Lajoie, Amartya Sanyal, 2012, Nature.

Insights into male germ cell apoptosis due to depletion of gonadotropins caused by GnRH antagonists

A. Sanyal, R. Dighe, Ayesha R. Joshi, 2007, Apoptosis.

Digital Karyotyping for Rapid Authentication of Cell Lines

A. Chattopadhyay, A. I. S. Khalil, Amartya Sanyal, 2019 .

Aneuploidy Spectrum Analysis as a Primer for Copy Number Profiling of 1 Cancer Cells 2

Amartya Sanyal, Ahmed Ibrahim, Samir Khalil, 2022 .

High-resolution RNA allelotyping along the inactive X chromosome: evidence of RNA polymerase III in regulating chromatin configuration

H. Ng, Kun Zhang, A. Sanyal, 2017, Scientific Reports.

Escholarship@umms Program in Gene Function and Expression Publications and Presentations Program in Gene Function and Expression the Long-range Interaction Landscape of Gene Promoters Repository Citation

J. Dekker, B. Lajoie, Amartya Sanyal, 2022 .