Antony Kaspi

发表

Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals

I. Haviv, G. Yaari, R. Chung, 2019, PLoS genetics.

Digital expression explorer 2: a repository of uniformly processed RNA sequencing data

Mark Ziemann, Antony Kaspi, Assam El-Osta, 2019, GigaScience.

Dynamic changes in the cardiac methylome during postnatal development

A. El-Osta, M. Ziemann, A. Kaspi, 2015, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Evaluation of microRNA alignment techniques

A. El-Osta, M. Ziemann, A. Kaspi, 2016, RNA.

Epigenetic Regulation of Cell Type–Specific Expression Patterns in the Human Mammary Epithelium

I. Haviv, X. Liu, T. Nikolskaya, 2011, PLoS genetics.

Molecular profiling of human mammary gland links breast cancer risk to a p27(+) cell population with progenitor characteristics.

Gedge D. Rosson, M. Pike, I. Haviv, 2013, Cell stem cell.

Germline variants in tumor suppressor FBXW7 lead to impaired ubiquitination and a neurodevelopmental syndrome.

P. Lockhart, I. Scheffer, H. Mefford, 2022, American journal of human genetics.

Systems approach to the pharmacological actions of HDAC inhibitors reveals EP300 activities and convergent mechanisms of regulation in diabetes

A. El-Osta, T. Karagiannis, M. Ziemann, 2017, Epigenetics.

Genetic aetiologies for childhood speech disorder: novel pathways co-expressed during brain development

Victoria E. Jackson, I. Scheffer, S. Fisher, 2022, Molecular Psychiatry.

Infanticide vs. inherited cardiac arrhythmias

R. Redon, P. Schwartz, M. Nyegaard, 2020, Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology.

Parity and BRCA1/2-associated breast cancer risk linked to hormone-responsive p27 + luminal epithelial progenitors

Stuart, Pedram, Gedge, 2018 .

Multicellular Transcriptional Analysis of Mammalian Heart Regeneration

M. Ramialison, A. El-Osta, M. Ziemann, 2017, Circulation.

Dysregulation of the cohesin subunit RAD21 by Hepatitis C virus mediates host–virus interactions

I. Haviv, Yehuda Brody, A. El-Osta, 2019, Nucleic acids research.

Sex-Specific Control of Human Heart Maturation by the Progesterone Receptor

L. Delbridge, I. Konstantinov, D. Elliott, 2021, Circulation.

Age-Related Differential Structural and Transcriptomic Responses in the Hypertensive Heart

A. El-Osta, D. Kaye, F. Marques, 2018, Front. Physiol..

Deep sequencing reveals increased DNA methylation in chronic rat epilepsy

I. Blümcke, E. Hahnen, A. El-Osta, 2013, Acta Neuropathologica.

Diet during Pregnancy is Implicated in the Regulation of Hypothalamic RNA Methylation and Risk of Obesity in Offspring

P. Zimmet, A. El-Osta, M. Ziemann, 2018, Molecular nutrition & food research.

DNA methylation regulates hypothalamic gene expression linking parental diet during pregnancy to the offspring’s risk of obesity in Psammomys obesus

P. Zimmet, A. El-Osta, M. Ziemann, 2016, International Journal of Obesity.

Non-referenced genome assembly from epigenomic short-read data

P. Zimmet, A. El-Osta, M. Ziemann, 2014, Epigenetics.

Rapid Development of Non-Alcoholic Steatohepatitis in Psammomys obesus (Israeli Sand Rat)

R. Standish, A. El-Osta, M. Ziemann, 2014, PloS one.

Hypothalamic gene expression is regulated by DNA methylation linking parental diet during pregnancy to offspring’s risk of obesity in psammomys obesus

P. Zimmet, A. El-Osta, M. Ziemann, 2017 .

Vascular histone deacetylation by pharmacological HDAC inhibition

Izhak Haviv, Mark Ziemann, Antony Kaspi, 2014, Genome research.

Genomic DNA methylation distinguishes subtypes of human focal cortical dysplasia

E. Aronica, I. Blümcke, H. Hamer, 2019, Epilepsia.

Transcription factors Tp73, Cebpd, Pax6, and Spi1 rather than DNA methylation regulate chronic transcriptomics changes after experimental traumatic brain injury

A. Pitkänen, A. El-Osta, M. Ziemann, 2018, Acta Neuropathologica Communications.

Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells.

R. Tothill, I. Haviv, Jingde Zhu, 2011, Genome research.

Etiology matters – Genomic DNA Methylation Patterns in Three Rat Models of Acquired Epilepsy

A. El-Osta, K. Dębski, K. Kobow, 2016, Scientific Reports.

mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling data

M. Ziemann, A. Kaspi, Antony Kaspi, 2020, BMC Genomics.

Reduced methylation correlates with diabetic nephropathy risk in type 1 diabetes

Merlin C. Thomas, R. Ma, T. Hansen, 2023, The Journal of clinical investigation.

Combining target enrichment with barcode multiplexing for high throughput SNP discovery

I. Haviv, S. Lunke, A. Rickers, 2010, BMC Genomics.

Lipoxins Regulate the Early Growth Response-1 Network and Reverse Diabetic Kidney Disease.

M. Cooper, E. Brennan, A. El-Osta, 2018, Journal of the American Society of Nephrology : JASN.

Clinical applicability of methylome sequencing in a pilot study of ischemic stroke individuals

D. D. De Silva, A. El-Osta, M. Ziemann, 2015 .

DNA methylation patterns from peripheral blood separate coronary artery disease patients with and without heart failure

Abdul Waheed Khan, P. Myles, A. El-Osta, 2020, ESC heart failure.

A pipeline for the identification and characterization of chromatin modifications derived from ChIP-Seq datasets.

A. El-Osta, M. Ziemann, A. Kaspi, 2012, Biochimie.

RNA-seq-based identification of Star upregulation by islet amyloid formation.

S. Kahn, A. El-Osta, Andrew T. Templin, 2019, Protein engineering, design & selection : PEDS.

mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling data

M. Ziemann, A. Kaspi, Antony Kaspi, 2020, BMC Genomics.