Ou-Yang Le

发表

Predicting Protein-Ligand Binding Affinity with Equivariant Line Graph Network

Le Ou-Yang, Pei-Ying Zhao, Kangfei Zhao, 2022, ArXiv.

RepLong: de novo repeat identification using long read sequencing data

Yiwen Sun, Le Ou-Yang, Rui Guo, 2018, Bioinform..

A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks

Hong Yan, Le Ou-Yang, Xiao-Fei Zhang, 2017, BMC Bioinformatics.

Detecting overlapping protein complexes based on a generative model with functional and topological properties

Dao-Qing Dai, Hong Yan, Le Ou-Yang, 2014, BMC Bioinformatics.

A Joint Graphical Model for Inferring Gene Networks Across Multiple Subpopulations and Data Types

Hong Yan, Ting Yan, Le Ou-Yang, 2019, IEEE Transactions on Cybernetics.

Identifying differential networks based on multi-platform gene expression data.

Le Ou-Yang, Hong Yan, Xiao-Fei Zhang, 2016, Molecular bioSystems.

Identifying Gene Network Rewiring by Integrating Gene Expression and Gene Network Data

Le Ou-Yang, Ting Xu, Xiaohua Hu, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Incorporating prior information into differential network analysis using non‐paranormal graphical models

Hong Yan, Xiao-Fei Zhang, Le Ou-Yang, 2017, Bioinform..

Joint learning of multiple gene networks from single-cell gene expression data

Weixin Xie, Zexuan Zhu, Le Ou-Yang, 2020, Computational and structural biotechnology journal.

scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation

Hong Yan, Xing-Ming Zhao, Le Ou-Yang, 2020, Bioinform..

Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer

Dao-Qing Dai, Hong Yan, Le Ou-Yang, 2016, BMC Bioinformatics.

Protein complex detection based on partially shared multi-view clustering

D. Dai, Yuan Zhu, Meng-Yun Wu, 2016, BMC Bioinformatics.

Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks

Hong Yan, Dao-Qing Dai, Le Ou-Yang, 2016, BMC Bioinformatics.

Determining minimum set of driver nodes in protein-protein interaction networks

Xiao-Fei Zhang, Le Ou-Yang, Yuan Zhu, 2015, BMC Bioinformatics.

Protein Complex Detection via Weighted Ensemble Clustering Based on Bayesian Nonnegative Matrix Factorization

Le Ou-Yang, Xiao-Fei Zhang, Dao-Qing Dai, 2013, PloS one.

Exploring Overlapping Functional Units with Various Structure in Protein Interaction Networks

Dao-Qing Dai, Le Ou-Yang, Meng-Yun Wu, 2012, PloS one.

Inferring Gene Co-Expression Networks by Incorporating Prior Protein-Protein Interaction Networks

Le Ou-Yang, Xiao-Fei Zhang, Hong Yan, 2021, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Differential Network Analysis via Weighted Fused Conditional Gaussian Graphical Model

Hong Yan, Xiao-Fei Zhang, Le Ou-Yang, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Identifying Gene Network Rewiring Based on Partial Correlation

Xingpeng Jiang, Hong Yan, Le Ou-Yang, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Time-Varying Differential Network Analysis for Revealing Network Rewiring over Cancer Progression

Ting Xu, Hong Yan, Le Ou-Yang, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Inferring Gene Network Rewiring by Combining Gene Expression and Gene Mutation Data

Xiaohua Hu, Xiao-Fei Zhang, Le Ou-Yang, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Node-based differential network analysis in genomics

Hong Yan, Xiao-Fei Zhang, Le Ou-Yang, 2017, Comput. Biol. Chem..

Differential network analysis from cross-platform gene expression data

Hong Yan, Xing-Ming Zhao, Xiao-Fei Zhang, 2016, Scientific Reports.

Identifying Gene Network Rewiring Using Robust Differential Graphical Model with Multivariate

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Xiao-Fei Zhang, Le Ou-Yang, Xiaohua Hu, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks

D. Dai, Hong Yan, Yuan Zhu, 2016, BMC Bioinformatics.

Inferring cancer common and specific gene networks via multi-layer joint graphical model

Le Ou-Yang, Xiao-Fei Zhang, Ou-Yang Le, 2023, Computational and structural biotechnology journal.

EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning

Hong Yan, Xing-Ming Zhao, Le Ou-Yang, 2019, Bioinform..

LncRNA-Disease Association Prediction Using Two-Side Sparse Self-Representation

Yiwen Sun, Zexuan Zhu, Le Ou-Yang, 2019, Front. Genet..

Predicting synthetic lethal interactions in human cancers using graph regularized self-representative matrix factorization

Min Wu, Le Ou-Yang, Fan Lu, 2019, BMC Bioinformatics.

Detecting overlapping protein complexes based on a generative model with functional and topological properties : Additional file 1

D. Dai, Xiao-Fei Zhang, Ou-Yang Le, 2014 .

Sparse regularized low-rank tensor regression with applications in genomic data analysis

Hong Yan, Le Ou-Yang, Xiao-Fei Zhang, 2020, Pattern Recognit..

NJGCG: A node-based joint Gaussian copula graphical model for gene networks inference across multiple states

Xiao-Fei Zhang, Ou-Yang Le, Yun Huang, 2024, Computational and structural biotechnology journal.

scDEA: differential expression analysis in single-cell RNA-sequencing data via ensemble learning

Yuan Zhu, Le Ou-Yang, Xiao-Fei Zhang, 2021, Briefings Bioinform..

WDNE: an integrative graphical model for inferring differential networks from multi-platform gene expression data with missing values

Le Ou-Yang, Xiao-Fei Zhang, Dehan Cai, 2021, Briefings Bioinform..

Identifying binary protein-protein interactions from affinity purification mass spectrometry data

Xiaohua Hu, Dao-Qing Dai, Le Ou-Yang, 2015, BMC Genomics.

Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity

Hong Yan, Le Ou-Yang, Xiao-Fei Zhang, 2020, Bioinform..