Zhidong Xue

发表

Prediction of pi-turns in proteins using PSI-BLAST profiles and secondary structure information.

Jin Xu, Yan Wang, Zhi-Dong Xue, 2006, Biochemical and biophysical research communications.

Protein domain identification methods and online resources

Z. Xue, Haolin Zhong, Yan Wang, 2021, Computational and structural biotechnology journal.

DeepNeuropePred: A robust and universal tool to predict cleavage sites from neuropeptide precursors by protein language model

Z. Xue, L. Wang, Yan Wang, 2023, bioRxiv.

Deep learning for mining protein data

Yan Wang, Weiya Chen, Qiang Shi, 2019, Briefings Bioinform..

Improving the topology prediction of α-helical transmembrane proteins with deep transfer learning

Z. Xue, Lei Wang, Haolin Zhong, 2022, Computational and structural biotechnology journal.

Fueling ab initio folding with marine metagenomics enables structure and function predictions of new protein families

Yan Wang, Kang Ning, Yang Zhang, 2019, Genome Biology.

NeuroPep: a comprehensive resource of neuropeptides

Jian Wang, Tao Xu, Yan Wang, 2015, Database J. Biol. Databases Curation.

NeuroPred-PLM: an interpretable and robust model for neuropeptide prediction by protein language model

Lei Wang, Mingxia Wang, Yan Wang, 2023, Briefings Bioinform..

Integration of QUARK and I‐TASSER for Ab Initio Protein Structure Prediction in CASP11

Hong-Bin Shen, Jianyi Yang, Yang Zhang, 2016, Proteins.

I-TASSER-MR: automated molecular replacement for distant-homology proteins using iterative fragment assembly and progressive sequence truncation

Yang Zhang, Yan Wang, Zhidong Xue, 2017, Nucleic Acids Res..

Template‐based protein structure prediction in CASP11 and retrospect of I‐TASSER in the last decade

Hong-Bin Shen, Yang Zhang, Jianyi Yang, 2016, Proteins.

Using iterative fragment assembly and progressive sequence truncation to facilitate phasing and crystal structure determination of distantly related proteins.

Yan Wang, Zhidong Xue, Z. Xue, 2016, Acta crystallographica. Section D, Structural biology.

ThreaDom: extracting protein domain boundary information from multiple threading alignments

Dong Xu, Yang Zhang, Yan Wang, 2013, Bioinform..

ThreaDomEx: a unified platform for predicting continuous and discontinuous protein domains by multiple-threading and segment assembly

Jian Wang, Yang Zhang, Yan Wang, 2017, Nucleic Acids Res..

Res-Dom: predicting protein domain boundary from sequence using deep residual network and Bi-LSTM

L. Wang, Haolin Zhong, Yan Wang, 2022, Bioinformatics advances.

DNN-Dom: predicting protein domain boundary from sequence alone by deep neural network

Yan Wang, Weiya Chen, Qiang Shi, 2019, Bioinform..

Extending Protein Domain Boundary Predictors to Detect Discontinuous Domains

Yan Wang, Zhidong Xue, Richard Jang, 2015, PloS one.

StraPep: a structure database of bioactive peptides

Jian Wang, Yan Wang, Dan He, 2018, Database J. Biol. Databases Curation.

Better prediction of the location of α‐turns in proteins with support vector machine

Yan Wang, Jin Xu, Zhi-Dong Xue, 2006 .

Better prediction of the location of alpha-turns in proteins with support vector machine.

Yan Wang, Zhidong Xue, Jin Xu, 2006, Proteins.

PRINTR: Prediction of RNA binding sites in proteins using SVM and profiles

Y. Wang, Z. Xue, G. Shen, 2008, Amino Acids.