Matteo Carrara

Dynamic thresholding and tissue dissociation optimization for CITE-seq identifies differential surface protein abundance in metastatic melanoma

C. Beisel, J. M. Martínez Gómez, M. Levesque, 2023, Communications biology.

gExcite: a start-to-end framework for single-cell gene expression, hashing, and antibody analysis

C. Beisel, D. Stekhoven, M. Levesque, 2022, bioRxiv.

How much should we sequence? An analysis of the Swiss SARS- CoV-2 surveillance effort

Stephen L. Leib, C. Howald, A. Trkola, 2023, medRxiv.

V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation

L. du Plessis, N. Beerenwinkel, D. Dreifuss, 2023, bioRxiv.