David A. Lee

发表

A rapid classification protocol for the CATH Domain Database to support structural genomics

James E. Bray, Frances M. G. Pearl, Nigel J. Martin, 2001, Nucleic Acids Res..

Gene3D: Extensive prediction of globular domains in proteins

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2017, Nucleic Acids Res..

Predicting reliability investment to achieve given reliability improvement

E. Andrew Long, David A. Lee, James A. Forbes, 2009, 2009 Annual Reliability and Maintainability Symposium.

Integration of photolithographic simulation and a mask repair system into a single concurrent work cell

David A. Lee, Ron Bozak, Peter Brooker, 2005, SPIE Photomask Technology.

The Rayleigh Analyzer (Trade name). Volume 2: Users Manual.

David A. Lee, John A. Dukovich, Scott Houser, 1999 .

Estimating Cost and Schedule of Reliability Improvement

E. Andrew Long, David A. Lee, 2011 .

Gene3D: structural assignments for the biologist and bioinformaticist alike

James E. Bray, Frances M. G. Pearl, Daniel W. A. Buchan, 2003, Nucleic Acids Res..

CATH: comprehensive structural and functional annotations for genome sequences

David A. Lee, Ian Sillitoe, Janet M. Thornton, 2014, Nucleic Acids Res..

Guidelines for Selecting Pneumatic Conveying Systems

David A. Lee, 2008 .

Rotary‐Wing Dynamic Stability

David A. Lee, 2010 .

CATH FunFHMMer web server: protein functional annotations using functional family assignments

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Nucleic Acids Res..

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Bioinform..

Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases

David A. Lee, Christine A. Orengo, Natalie L. Dawson, 2016, PLoS Comput. Biol..

Final-Cost Estimates for Research and Development Programs Conditioned on Realized Costs.

David A. Lee, Mark A. Gallagher, 1996 .

Impact of AFM scan artifacts on photolithographic simulation

David A. Lee, Peter Brooker, Tod Robinson, 2006, SPIE Photomask Technology.

Application of photolithographic simulation and a mask repair system in a production environment

David A. Lee, Ron Bozak, Peter Brooker, 2006, Photomask Japan.

CATH: an expanded resource to predict protein function through structure and sequence

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2016, Nucleic Acids Res..

VIDA: a virus database system for the organization of animal virus genome open reading frames

Frances M. G. Pearl, Nigel J. Martin, David A. Lee, 2001, Nucleic Acids Res..

A structural perspective on genome evolution

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2004, RECOMB.

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2013, Nucleic Acids Res..

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Bioinform..

EyeSite: a semi-automated database of protein families in the eye

David A. Lee, Christine A. Orengo, Sandrine Fefeu, 2004, Nucleic Acids Res..

Analytic Methods for Tactical Air Warfare - 2005: Air Campaign and Mathematical Analysis

Dou Long, David A. Lee, John A. Dukovich, 2005 .

Better Development Cost Estimating Through Modeling and Simulation

David A. Lee, John A. Dukovich, Gerald J. Belcher, 2000 .

Mask repair for the 65nm technology node

David A. Lee, Ken Roessler, Roy White, 2005, SPIE Photomask Technology.

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

David A. Lee, Ian Sillitoe, Janet M. Thornton, 2012, Nucleic Acids Res..

Gene3D: modelling protein structure, function and evolution

David A. Lee, Christine A. Orengo, Mark Dibley, 2005, Nucleic Acids Res..

A Trajectory Optimization Model To Support Aviation Systems Analysis

Brett Malone, David A. Lee, Bruce Kaplan, 1997 .

Encryption and decryption apparatus and method for digital video transmission stop

David A. Lee, Gary L. Graunke, Brendan Traw, 2000 .

Stochastic Lanchester Air-To-Air Campaign Model: Methods Used to Generate Model Outputs and a User's Guide: 2007

David A. Lee, John A. Dukovich, Robert Hemm, 2007 .

Gene3D: expanding the utility of domain assignments

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Nucleic Acids Res..

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis

Frances M. G. Pearl, Andrew P. Harrison, David A. Lee, 2004, Nucleic Acids Res..

Improved cycle time of mask repair by optimizing nanomachining with photolithographic imaging simulation

David A. Lee, Ron Bozak, Peter Brooker, 2005, Photomask Japan.

Assigning genomic sequences to CATH

James E. Bray, Frances M. G. Pearl, Andrew P. Harrison, 2000, Nucleic Acids Res..

Stochastic Lanchester Air-to-Air Campaign Model: Model Description and Users Guides

David A. Lee, John A. Dukovich, Robert Hemm, 2009 .

Gene3D: Extensive prediction of globular domains in proteins

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2017, Nucleic Acids Res..

Predicting protein function from sequence and structure

David A. Lee, C. Orengo, Oliver Redfern, 2007, Nature Reviews Molecular Cell Biology.

The CATH extended protein‐family database: Providing structural annotations for genome sequences

Frances M. G. Pearl, Daniel W. A. Buchan, David A. Lee, 2002, Protein science : a publication of the Protein Society.

The CATH protein family database: A resource for structural and functional annotation of genomes

Frances M. G. Pearl, Daniel W. A. Buchan, David A. Lee, 2002, Proteomics.

Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database.

Frances M. G. Pearl, Daniel W. A. Buchan, David A. Lee, 2002, Genome research.

Domain-based and family-specific sequence identity thresholds increase the levels of reliable protein function transfer.

David A. Lee, C. Orengo, R. Rentzsch, 2009, Journal of molecular biology.

GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains

David A. Lee, C. Orengo, R. Rentzsch, 2009, Nucleic acids research.

PSI-2: structural genomics to cover protein domain family space.

David A. Lee, Benoit H. Dessailly, B. Rost, 2009, Structure.

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Bioinform..

A structural perspective on genome evolution.

Daniel W. A. Buchan, David A. Lee, Christine A. Orengo, 2003 .

Chapter 1. Target selection in structural genomics projects to increase knowledge of protein structure and function space.

David A. Lee, C. Orengo, Phil Carter, 2008, Advances in protein chemistry and structural biology.

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

David A. Lee, Jonathan G. Lees, C. Orengo, 2015, Bioinform..

Extensive prediction of globular domains in proteins.

David A. Lee, Tony E. Lewis, Su Datt Lam, 2017 .

Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space

David A. Lee, Christine A. Orengo, Michael Maibaum, 2006, Nucleic acids research.

Progress towards mapping the universe of protein folds

David A. Lee, Christine Orengo, C. Orengo, 2004, Genome Biology.

Identification and distribution of protein families in 120 completed genomes using Gene3D

David A. Lee, Christine Orengo, Russell L. Marsden, 2005, Proteins.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Tapio Salakoski, Paolo Fontana, Silvio C. E. Tosatto, 2016, Genome Biology.

Trimethylaminuria and a human FMO3 mutation database

David A. Lee, C. Orengo, I. Phillips, 2003, Human mutation.

Insights into protein evolution and function from the CATH structural database

James E. Bray, Frances M. G. Pearl, David A. Lee, 2001 .

Exploiting protein structure data to explore the evolution of protein function and biological complexity

David A. Lee, Gabrielle A. Reeves, Sarah Addou, 2006, Philosophical Transactions of the Royal Society B: Biological Sciences.

Yeast cytochrome c oxidase: a model system to study mitochondrial forms of the haem-copper oxidase superfamily.

David A. Lee, C. Orengo, P. Rich, 2012, Biochimica et biophysica acta.

1,000 structures and more from the MCSG

Janet M Thornton, David A. Lee, Roman A Laskowski, 2011, BMC Structural Biology.

CATH: comprehensive structural and functional annotations for genome sequences

David A. Lee, Tony E. Lewis, Alison L. Cuff, 2014, Nucleic Acids Research.

annotations for genome sequences The CATH extended protein-family database : Providing structural

Daniel W. A. Buchan, David A. Lee, J. Bray, 2002 .

Chapter 1. Target selection in structural genomics projects to increase knowledge of protein structure and function space.

David A. Lee, C. Orengo, Phil Carter, 2008, Advances in protein chemistry and structural biology.

CATH: comprehensive structural and functional annotations for genome sequences

David A. Lee, Tony E. Lewis, Jonathan G. Lees, 2014, Nucleic Acids Res..