Ian Sillitoe

发表

A rapid classification protocol for the CATH Domain Database to support structural genomics

James E. Bray, Frances M. G. Pearl, Nigel J. Martin, 2001, Nucleic Acids Res..

Gene3D: Extensive prediction of globular domains in proteins

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2017, Nucleic Acids Res..

FunTree: advances in a resource for exploring and contextualising protein function evolution

Ian Sillitoe, Nicholas Furnham, 2016, Nucleic Acids Res..

Structure Comparisons Beyond the Experimental Realm: Paving the Way for Higher Quality Structure Predictions

Ian Sillitoe, X De La Cruz, Christine A. Orengo, 2001 .

Assessing strategies for improved superfamily recognition

Ian Sillitoe, Mark Dibley, James E. Bray, 2005, Protein Science.

CATH FunFams for domain boundary recogntion and template selection

Ian Sillitoe, Christine A. Orengo, Sayoni Das, 2018 .

cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly

Ian Sillitoe, Tony E. Lewis, Jonathan G. Lees, 2018, Bioinform..

Genome3D: exploiting structure to help users understand their sequences

Marco Punta, Sameer Velankar, Daniel W. A. Buchan, 2015, Nucleic Acids Res..

Exploring Enzyme Evolution from Changes in Sequence, Structure, and Function.

Jonathan D Tyzack, Janet M Thornton, Ian Sillitoe, 2018, Methods in molecular biology.

Use of structure comparison methods for the refinement of protein structure predictions. I. Identifying the structural family of a protein from low‐resolution models

Ian Sillitoe, Christine Orengo, Xavier de la Cruz, 2002, Proteins.

CATH: expanding the horizons of structure-based functional annotations for genome sequences

Ian Sillitoe, Janet M. Thornton, Christine A. Orengo, 2018, Nucleic Acids Res..

InterPro in 2017—beyond protein family and domain annotations

Silvio C. E. Tosatto, Neil D. Rawlings, Huaiyu Mi, 2016, Nucleic Acids Res..

CATH: comprehensive structural and functional annotations for genome sequences

David A. Lee, Ian Sillitoe, Janet M. Thornton, 2014, Nucleic Acids Res..

Recognizing the fold of a protein structure

Frances M. G. Pearl, Andrew P. Harrison, Ian Sillitoe, 2003, Bioinform..

CATH FunFHMMer web server: protein functional annotations using functional family assignments

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Nucleic Acids Res..

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Bioinform..

Learning Decision Trees for Mapping the Local Environment in Mobile Robot Navigation

Tapio Elomaa, Ian Sillitoe, 2007 .

CATH-Gene3D: Generation of the Resource and Its Use in Obtaining Structural and Functional Annotations for Protein Sequences.

Ian Sillitoe, Su Datt Lam, Natalie L Dawson, 2017, Methods in molecular biology.

MSAViewer: interactive JavaScript visualization of multiple sequence alignments

Burkhard Rost, Ian Sillitoe, Suzanna Lewis, 2016, Bioinform..

The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences

Phil Carter, Ian Sillitoe, Christine A. Orengo, 2011, Nucleic Acids Res..

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

Sameer Velankar, James Smith, Daniel W. A. Buchan, 2012, Nucleic Acids Res..

CATH: an expanded resource to predict protein function through structure and sequence

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2016, Nucleic Acids Res..

A structural perspective on genome evolution

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2004, RECOMB.

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis

Ian Sillitoe, Christine A. Orengo, Jonathan G. Lees, 2011, Nucleic Acids Res..

The CATH database: an extended protein family resource for structural and functional genomics

James E. Bray, Frances M. G. Pearl, Nigel J. Martin, 2003, Nucleic Acids Res..

Integrating Genome3D structural annotations and predicted secondary structures in InterPro 7

Robert D. Finn, Gustavo A. Salazar, Ian Sillitoe, 2019 .

VarSite: Disease variants and protein structure

Janet M Thornton, Ian Sillitoe, James D Stephenson, 2019, Protein science : a publication of the Protein Society.

The Classification of Protein Domains.

Ian Sillitoe, Christine A Orengo, Russell L. Marsden, 2017, Methods in molecular biology.

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2013, Nucleic Acids Res..

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Bioinform..

Extending CATH: increasing coverage of the protein structure universe and linking structure with function

Ian Sillitoe, Janet M. Thornton, Christine A. Orengo, 2010, Nucleic Acids Res..

The design of a real time three dimensional vision system for object identification

Ian Sillitoe, Janet Edwards, 1991 .

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences

Robert Petryszak, Juan Antonio Vizcaíno, Frank Oliver Glöckner, 2020, Bioinformatics.

The InterPro protein families database: the classification resource after 15 years

Huaiyu Mi, Robert D. Finn, Matthew Fraser, 2014, Nucleic Acids Res..

An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences

Ian Sillitoe, Su Datt Lam, Sayoni Das, 2017, Acta crystallographica. Section D, Structural biology.

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

David A. Lee, Ian Sillitoe, Janet M. Thornton, 2012, Nucleic Acids Res..

Associating Protein Domains with Biological Functions: A Tripartite Network Approach

Ian Sillitoe, Christine A. Orengo, Pedro Seoane, 2019, IWBBIO.

The CATH classification revisited—architectures reviewed and new ways to characterize structural divergence in superfamilies

Ian Sillitoe, Janet M. Thornton, Christine A. Orengo, 2008, Nucleic Acids Res..

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Tapio Salakoski, Feng Zhang, Paolo Fontana, 2019, Genome Biology.

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies

Ian Sillitoe, Janet M. Thornton, Christine A. Orengo, 2011, Nucleic Acids Res..

Gene3D: expanding the utility of domain assignments

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Nucleic Acids Res..

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis

Frances M. G. Pearl, Andrew P. Harrison, David A. Lee, 2004, Nucleic Acids Res..

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

Silvio C. E. Tosatto, Neil D. Rawlings, Robert D. Finn, 2018, Nucleic Acids Res..

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution

Frances M. G. Pearl, Ian Sillitoe, Janet M. Thornton, 2006, Nucleic Acids Res..

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Tapio Salakoski, Paolo Fontana, Silvio C. E. Tosatto, 2016, Genome Biology.

Anatomy of BioJS, an open source community for the life sciences

Burkhard Rost, Devasena Inupakutika, Manuel Corpas, 2015, eLife.

FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies

Ian Sillitoe, Christine A. Orengo, Benoit H. Dessailly, 2009, PLoS Comput. Biol..

Assigning genomic sequences to CATH

James E. Bray, Frances M. G. Pearl, Andrew P. Harrison, 2000, Nucleic Acids Res..

Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies

Ian Sillitoe, Janet M. Thornton, Christine A. Orengo, 2012, PLoS Comput. Biol..

Gene3D: Extensive prediction of globular domains in proteins

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2017, Nucleic Acids Res..

Assigning protein function from domain-function associations using DomFun

Ian Sillitoe, Christine A. Orengo, Juan Garcia Ranea, 2022, BMC Bioinform..

Sequence analysis MSAViewer : interactive JavaScript visualization of multiple sequence alignments

Ian Sillitoe, Suzanna E. Lewis, Burkhard Rost, 2016 .

The CATH Hierarchy Revisited—Structural Divergence in Domain Superfamilies and the Continuity of Fold Space

Ian Sillitoe, Tony E. Lewis, Mark Dibley, 2009, Structure.

Functional innovation from changes in protein domains and their combinations.

Ian Sillitoe, Natalie L Dawson, Jonathan G Lees, 2016, Current opinion in structural biology.

PDBe-KB: a community-driven resource for structural and functional annotations

Alfonso Valencia, Karel Berka, Jaroslav Koča, 2019, Nucleic Acids Res..

Assessing strategies for improved superfamily recognition

Ian Sillitoe, Mark Dibley, Sarah Addou, 2005, Protein science : a publication of the Protein Society.

BioJS: an open source standard for biological visualisation – its status in 2014

Aleksandra Pawlik, Leyla Jael García Castro, Henning Hermjakob, 2014, F1000Research.

The history of the CATH structural classification of protein domains

Ian Sillitoe, Christine Orengo, Janet Thornton, 2015, Biochimie.

Understanding enzyme function evolution from a computational perspective.

Jonathan D Tyzack, Janet M Thornton, Ian Sillitoe, 2017, Current opinion in structural biology.

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

David A. Lee, Ian Sillitoe, Christine A. Orengo, 2015, Bioinform..

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

Jari Björne, Tapio Salakoski, Giorgio Valentini, 2019, Genome Biology.