Shuhei Kimura

发表

Inference of Genetic Networks using Random Forests: A Quantitative Weighting Method for Gene Expression Data

S. Kimura, M. Tokuhisa, Kazuki Sota, 2022, 2022 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

An Effective Method for the Inference of Reduced S-system Models of Genetic Networks

Shuhei Kimura, Masanao Sato, Mariko Okada-Hatakeyama, 2014 .

Computation of restoration of ligand response in the random kinetics of a prostate cancer cell signaling pathway

Mariko Okada, Saswati Dana, Soumyendu Raha, 2011, Comput. Methods Programs Biomed..

Constrained multimodal function optimization using a simple evolutionary algorithm

Shuhei Kimura, Koki Matsumura, S. Kimura, 2011, 2011 IEEE Congress of Evolutionary Computation (CEC).

Positive Feedback Within a Kinase Signaling Complex Functions as a Switch Mechanism for NF-κB Activation

Michio Hiroshima, Yasushi Sako, Mariko Okada-Hatakeyama, 2014, Science.

A computational model on the modulation of mitogen-activated protein kinase (MAPK) and Akt pathways in heregulin-induced ErbB signalling.

S. Kimura, A. Konagaya, Kazuki Saito, 2003, The Biochemical journal.

Inference of genetic networks using random forests: Assigning different weights for gene expression data

Shuhei Kimura, Mariko Okada, Masato Tokuhisa, 2019, J. Bioinform. Comput. Biol..

Using A Priori Knowledge after Genetic Network Inference: Integrating Multiple Kinds of Knowledge

Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama, 2017 .

Simultaneous execution method of gene clustering and network inference

Shuhei Kimura, Mariko Okada, Masato Tokuhisa, 2016, 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

Inference of Vohradský's Models of Genetic Networks using a Real‐coded Genetic Algorithm

Shuhei Kimura, Shuhei Kimura, 2016 .

Genetic Network Inference Using Hierarchical Structure

Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama, 2016, Front. Physiol..

Inference of Vohradský's Models of Genetic Networks by Solving Two-Dimensional Function Optimization Problems

Mariko Okada-Hatakeyama, Masanao Sato, Shuhei Kimura, 2013, PloS one.

Development of an efficient parameter estimation method for the inference of Vohradský's neural network models of genetic networks

Shuhei Kimura, Mariko Okada, Masanao Sato, 2013, The 2013 International Joint Conference on Neural Networks (IJCNN).

Inference of S-system models of genetic networks by solving one-dimensional function optimization problems.

S. Kimura, S Kimura, D Araki, 2012, Mathematical biosciences.

AGLSDC: A Genetic Local Search Suitable for Parallel Computation

Shuhei Kimura, Mariko Okada, Takashi Nakakuki, 2011 .

Inference of Genetic Networks Using Lpms: Assessment of Confidence Values of Regulations

Shuhei Kimura, Yuichi Shiraishi, Mariko Okada, 2010, J. Bioinform. Comput. Biol..

Effective parameter estimation for S-system models using LPMs and evolutionary algorithms

Shuhei Kimura, Mariko Okada, Koki Matsumura, 2010, IEEE Congress on Evolutionary Computation.

Inferring cluster-based networks from differently stimulated multiple time-course gene expression data

Shuhei Kimura, Yuichi Shiraishi, Mariko Okada, 2010, Bioinform..

Inference of genetic networks using linear programming machines: Application of a priori knowledge

Shuhei Kimura, Yuichi Shiraishi, Mariko Okada, 2009, 2009 International Joint Conference on Neural Networks.

Genetic network inference as a series of discrimination tasks

Shuhei Kimura, Mariko Okada, Satoshi Nakayama, 2009, Bioinform..

Function approximation approach to the inference of reduced NGnet models of genetic networks

Shuhei Kimura, Mariko Okada, Koki Matsumura, 2008, BMC Bioinformatics.

Inference of Genetic Networks using a Reduced NGnet Model

Shuhei Kimura, Mariko Okada, Koki Matsumura, 2007, 2007 International Joint Conference on Neural Networks.

Function Approximation Approach to the Inference of Neural Network Models of Genetic Networks

Shuhei Kimura, Koki Matsumura, Katsuki Sonoda, 2007 .

Function Approximation Approach to the Inference of Normalized Gaussian Network Models of Genetic Networks

Shuhei Kimura, Mariko Okada, Koki Matsumura, 2006, The 2006 IEEE International Joint Conference on Neural Network Proceedings.

Inference of genetic networks using neural network models

Shuhei Kimura, Mariko Okada, Koki Matsumura, 2005, 2005 IEEE Congress on Evolutionary Computation.

BIOINFORMATICS Inferring cluster-based networks from differently stimulated multiple time-course gene expression data

S. Kimura, Yuichi Shiraishi, Mariko Okada, 2010 .

Inference of Genetic Networks Using an Evolutionary Algorithm

S. Kimura, Shuhei Kimura, 2008 .

Transcriptionally inducible Pleckstrin homology-like domain, family A, member 1, attenuates ErbB receptor activity by inhibiting receptor oligomerization

B. Kholodenko, S. Kimura, A. von Kriegsheim, 2017, The Journal of Biological Chemistry.

An ErbB receptor–mediated AP‐1 regulatory network is modulated by STAT3 and c‐MYC during calcium‐dependent keratinocyte differentiation

S. Kimura, M. Okada-Hatakeyama, T. Nagashima, 2012, Experimental dermatology.

Density estimation using crossover kernels and its application to a real-coded genetic algorithm

Shuhei Kimura, Koki Matsumura, S. Kimura, 2008, 2008 IEEE Congress on Evolutionary Computation (IEEE World Congress on Computational Intelligence).

Improvement of the Performances of Genetic Algorithms by Using Low-discrepancy Sequences

Koki Matsumura, Shuhei Kimura, Shuhei Kimura, 2006 .

Genetic algorithms using low-discrepancy sequences

Shuhei Kimura, Koki Matsumura, S. Kimura, 2005, GECCO '05.

Non-linear Function Optimization Using a Genetic Local Search Suitable for Parallelization

Shuhei Kimura, Shigenobu Kobayashi, Akihiko Konagaya, 2004 .

High dimensional function optimization using a new genetic local search suitable for parallel computers

Shuhei Kimura, Akihiko Konagaya, S. Kimura, 2003, SMC'03 Conference Proceedings. 2003 IEEE International Conference on Systems, Man and Cybernetics. Conference Theme - System Security and Assurance (Cat. No.03CH37483).

A Genetic Algorithm with Distance Independent Diversity Control for High Dimensional Function Optimization.

Shuhei Kimura, Akihiko Konagaya, Shuhei Kimura, 2003 .