Bjarne Knudsen

发表

Pfold: RNA Secondary Structure Prediction Using Stochastic Context-Free Grammars

Bjarne Knudsen, Jotun Hein, J. Hein, 2003 .

A Computer Simulator for Assessing Different Challenges and Strategies of de Novo Sequence Assembly

Bjarne Knudsen, Roald Forsberg, Michael M. Miyamoto, 2010, Genes.

Evidence for Faster X Chromosome Evolution in Spiders

B. Knudsen, M. Schierup, T. Bilde, 2019, Molecular biology and evolution.

Draft genome sequence of the rubber tree Hevea brasiliensis

Fui Ling Ng, Siti Suriawati Badai, M. Alam, 2013, BMC Genomics.

Next-Generation Sequencing of RNA and DNA Isolated from Paired Fresh-Frozen and Formalin-Fixed Paraffin-Embedded Samples of Human Cancer and Normal Tissue

Anne-Mette K. Hein, K. D. Sørensen, T. Ørntoft, 2014, PloS one.

Pfold: RNA secondary structure prediction using stochastic context-free grammars

J. Hein, Bjarne Knudsen, 2003, Nucleic Acids Res..

Neuronal Transcriptome of Aplysia: Neuronal Compartments and Circuitry

Sathyanarayanan V. Puthanveettil, E. Kandel, Y. Panchin, 2006, Cell.

Accurate and fast methods to estimate the population mutation rate from error prone sequences

Bjarne Knudsen, Michael M. Miyamoto, M. Miyamoto, 2009, BMC Bioinformatics.

Incorporating Experimental Design and Error Into Coalescent/Mutation Models of Population History

Bjarne Knudsen, M. Miyamoto, B. Knudsen, 2007, Genetics.

Using evolutionary rates to investigate protein functional divergence and conservation. A case study of the carbonic anhydrases.

Bjarne Knudsen, M. Miyamoto, B. Knudsen, 2003, Genetics.

A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins

M M Miyamoto, M. Miyamoto, B. Knudsen, 2001, Proceedings of the National Academy of Sciences of the United States of America.

RNA secondary structure prediction using stochastic context-free grammars and evolutionary history

Bjarne Knudsen, Jotun Hein, J. Hein, 1999, Bioinform..

Transcriptional regulation of the stem cell leukemia gene (SCL)--comparative analysis of five vertebrate SCL loci.

Berthold Göttgens, Bjarne Knudsen, Jane Rogers, 2002, Genome research.

Handling design-level requirements across distributed teams: Developing a new feature for 12 Danish mobile banking apps

Bjarne Knudsen, Jens Bæk Jørgensen, Lars Bruun, 2014, 2014 IEEE 22nd International Requirements Engineering Conference (RE).

Evolution of the thyrotropin receptor: a G protein coupled receptor with an intrinsic capacity to dimerize.

B. Knudsen, L. Puskás, S. Tóth, 2003, Molecular genetics and metabolism.

tmRDB (tmRNA database)

Christian Zwieb, Jan Gorodkin, Bjarne Knudsen, 2003, Nucleic Acids Res..

tmRDB (tmRNA database)

Christian Zwieb, Jan Gorodkin, Bjarne Knudsen, 2001, Nucleic Acids Res..

Characterising RNA secondary structure space using information entropy

Christian N. S. Pedersen, Bjarne Knudsen, Adam M. Novak, 2013, BMC Bioinformatics.

First draft genome sequence of the Japanese eel, Anguilla japonica.

Bjarne Knudsen, Katsumi Tsukamoto, Walter Pirovano, 2012, Gene.

Identification of functional amino acids in the Nramp family by a combination of evolutionary analysis and biophysical studies of metal and proton cotransport in vivo.

B. Knudsen, T. Tompkins, M. Cellier, 2005, Biochemistry.

Using equilibrium frequencies in models of sequence evolution

M. Miyamoto, B. Knudsen, Bjarne Knudsen, 2005, BMC Evolutionary Biology.

SRPDB: Signal Recognition Particle Database

Christian Zwieb, Jan Gorodkin, Bjarne Knudsen, 2003, Nucleic Acids Res..

Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars

Bjarne Knudsen, Zsuzsanna Sükösd, Jørgen Kjems, 2011, BMC Bioinformatics.

Optimal Multiple Parsimony Alignment with Affine Gap Cost Using a Phylogenetic Tree

Bjarne Knudsen, B. Knudsen, Bjarne Knudsen, 2003, WABI.

Complete DNA sequence of the mitochondrial genome of the sea-slug, Aplysia californica: conservation of the gene order in Euthyneura.

B. Knudsen, L. Moroz, C. McFadden, 2006, Molecular phylogenetics and evolution.

Semiautomated improvement of RNA alignments.

Peter Sestoft, Christian Zwieb, Jan Gorodkin, 2007, RNA.

Sequence alignments and pair hidden Markov models using evolutionary history.

M. Miyamoto, B. Knudsen, Bjarne Knudsen, 2003, Journal of molecular biology.

RNA interactions in the 5' region of the HIV-1 genome.

J. Gorodkin, J. Kjems, B. Knudsen, 2004, Journal of molecular biology.

Role of the Trans-activation Response Element in Dimerization of HIV-1 RNA*

J. Kjems, B. Knudsen, F. Besenbacher, 2004, Journal of Biological Chemistry.

Functional divergence of the circadian clock proteins in prokaryotes

B. Knudsen, V. Dvornyk, Bjarne Knudsen, 2005, Genetica.