Susan Idicula-Thomas

发表

PCOSKB: A KnowledgeBase on genes, diseases, ontology terms and biochemical pathways associated with PolyCystic Ovary Syndrome

Ram Shankar Barai, Susan Idicula-Thomas, Shaini Joseph, 2015, Nucleic Acids Res..

Comparison of machine learning algorithms applied to symptoms to determine infectious causes of death in children: national survey of 18,000 verbal autopsies in the Million Death Study in India

P. Jha, S. Idicula-Thomas, Ulka Gawde, 2021, BMC Public Health.

Protein aggregation : A perspective from amyloid and inclusion-body formation

S. Idicula-Thomas, P. V. Balaji, Susan Idicula-Thomas, 2007 .

Pathway Analysis of Genome Wide Association Studies (GWAS) Data Associated with Male Infertility

S. Idicula-Thomas, Ulka Gawde, B. Biswas, 2022, Reproductive Medicine.

A Chemical Proteomics Approach to Profiling the ATP-binding Proteome of Mycobacterium tuberculosis *

G. Besra, K. Wennerberg, S. Idicula-Thomas, 2013, Molecular & Cellular Proteomics.

Cervical cancer in Indian women reveals contrasting association among common sub-family of HLA class I alleles

S. Idicula-Thomas, H. Warke, H. Tongaonkar, 2014, Immunogenetics.

Hereditary basis of protein C deficiency (PCD) in thrombosis patients: First report from India

S. Idicula-Thomas, K. Ghosh, B. Kulkarni, 2009, Thrombosis and Haemostasis.

A support vector machine-based method for predicting the propensity of a protein to be soluble or to form inclusion body on overexpression in Escherichia coli

Bhaskar D. Kulkarni, Susan Idicula-Thomas, Vaidyanathan K. Jayaraman, 2006, Bioinform..

Understanding the relationship between the primary structure of proteins and its propensity to be soluble on overexpression in Escherichia coli

Susan Idicula-Thomas, Petety V Balaji, S. Idicula-Thomas, 2005, Protein science : a publication of the Protein Society.

Effect of high intratesticular estrogen on global gene expression and testicular cell number in rats

Zuping He, S. Idicula-Thomas, M. Dym, 2010, Reproductive biology and endocrinology : RB&E.

Designing Antibacterial Peptides with Enhanced Killing Kinetics

K. Venkatesh, S. Idicula-Thomas, E. Martis, 2018, Front. Microbiol..

Meta-analysis of gene expression profiles of lean and obese PCOS to identify differentially regulated pathways and risk of comorbidities

Gary D Bader, S. Idicula-Thomas, Ulka Gawde, 2020, Computational and structural biotechnology journal.

Surfactant Protein D Inhibits HIV-1 Infection of Target Cells via Interference with gp120-CD4 Interaction and Modulates Pro-Inflammatory Cytokine Production

R. Gajbhiye, A. Yadav, S. Idicula-Thomas, 2014, PloS one.

Protein–Protein Interaction between Surfactant Protein D and DC-SIGN via C-Type Lectin Domain Can Suppress HIV-1 Transfer

B. Nal, S. Idicula-Thomas, U. Kishore, 2017, Front. Immunol..

Membrane Interactome of a Recombinant Fragment of Human Surfactant Protein D Reveals GRP78 as a Novel Binding Partner in PC3, a Metastatic Prostate Cancer Cell Line

G. Sathe, R. Sirdeshmukh, S. Idicula-Thomas, 2021, Frontiers in Immunology.

CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides

Faiza Hanif Waghu, Ram Shankar Barai, Susan Idicula-Thomas, 2015, Nucleic Acids Res..

ClotBase: a knowledgebase on proteins involved in blood coagulation.

Ram Shankar Barai, S. Idicula-Thomas, A. Sonawani, 2010, Blood.

Central residues of FSHβ (89-97) peptide are not critical for FSHR binding: Implications for peptidomimetic design.

S. Idicula-Thomas, A. Contini, V. Dighe, 2021, Bioorganic & medicinal chemistry letters.

Identification and in vivo validation of a 9-mer peptide derived from FSHβ with FSHR antagonist activity

S. Idicula-Thomas, A. Contini, V. Dighe, 2020, Peptides.

A steady-state modeling approach for simulation of antimicrobial peptide-cell membrane interaction.

K. Venkatesh, S. Idicula-Thomas, Sumana Srinivasan, 2020, Biochimica et biophysica acta. Biomembranes.

Leveraging family-specific signatures for AMP discovery and high-throughput annotation

Faiza Hanif Waghu, Ram Shankar Barai, Susan Idicula-Thomas, 2016, Scientific Reports.

A QSAR modeling approach for predicting myeloid antimicrobial peptides with high sequence similarity

S. Idicula-Thomas, E. Coutinho, F. Waghu, 2020, Chemical biology & drug design.

CAMP: Collection of sequences and structures of antimicrobial peptides

Faiza Hanif Waghu, Ram Shankar Barai, Susan Idicula-Thomas, 2013, Nucleic Acids Res..

Expanding the therapeutic options for Candida infections using novel inhibitors of secreted aspartyl proteases

S. Idicula-Thomas, C. Kumar, Kshitija. S. Rahate, 2022, Drug development research.

Enrichment analyses of diseases and pathways associated with precocious puberty using PrecocityDB

Ram Shankar Barai, S. Idicula-Thomas, Indra Kundu, 2021, Scientific Reports.

Understanding the relationship between the primary structure of proteins and their amyloidogenic propensity: clues from inclusion body formation.

Susan Idicula-Thomas, Petety V Balaji, S. Idicula-Thomas, 2005, Protein engineering, design & selection : PEDS.

Human surfactant protein D facilitates SARS-CoV-2 pseudotype binding and entry in DC-SIGN expressing cells, and downregulates spike protein induced inflammation

N. Temperton, S. Idicula-Thomas, U. Kishore, 2022, bioRxiv.

CAMP: a useful resource for research on antimicrobial peptides

Shreyas Karnik, Ram Shankar Barai, Susan Idicula-Thomas, 2009, Nucleic Acids Res..

Exploring the druggable proteome of Candida species through comprehensive computational analysis.

Ram Shankar Barai, K. Venkatesh, S. Idicula-Thomas, 2021, Genomics.

Genomic and computational analysis of four novel variants of MPL gene in Congenital Amegakaryocytic Thrombocytopenia

B. Vundinti, C. Kumar, S. Mudaliar, 2023, Annals of Hematology.

Identification of Novel Mutations in HEXA Gene in Children Affected with Tay Sachs Disease from India

F. Sheth, J. Sheth, Sarita Gupta, 2012, Molecular Cytogenetics.

N-Linked Glycosylation in Chinese Hamster Ovary Cells Is Critical for Insulin-like Growth Factor 1 Signaling

S. Idicula-Thomas, C. Kumar, T. Madan, 2022, International journal of molecular sciences.

Effect of diversity in gp41 membrane proximal external region of primary HIV-1 Indian subtype C sequences on interaction with broadly neutralizing antibodies 4E10 and 10E8.

S. Idicula-Thomas, J. Bhattacharya, V. Patel, 2019, Virus research.

Anti-HSP90 autoantibodies in sera of infertile women identify a dominant, conserved epitope EP6 (380-389) of HSP90 beta protein

S. Idicula-Thomas, V. Khole, Eusebio S. Pires, 2011, Reproductive biology and endocrinology : RB&E.

Anti-HSP 90 autoantibodies in sera of infertile women identify a dominant , conserved epitope EP 6 ( 380-389 ) of HSP 90 beta protein

S. Idicula-Thomas, V. Khole, Eusebio S. Pires, 2011 .

CAMPR4: a database of natural and synthetic antimicrobial peptides

Ram Shankar Barai, S. Idicula-Thomas, F. Waghu, 2022, Nucleic Acids Res..

Collection of antimicrobial peptides database and its derivatives: Applications and beyond

Faiza Hanif Waghu, Susan Idicula-Thomas, S. Idicula-Thomas, 2019, Protein science : a publication of the Protein Society.

Discovery of small molecule binders of human FSHR(TMD) with novel structural scaffolds by integrating structural bioinformatics and machine learning algorithms.

S. Idicula-Thomas, A. Contini, Sanchi Shah, 2019, Journal of molecular graphics & modelling.

Correlation Between the Structural Stability and Aggregation Propensity of Proteins

Petety V. Balaji, Susan Idicula-Thomas, S. Idicula-Thomas, 2007, Silico Biol..

Protein aggregation : A perspective from amyloid and inclusion-body formation

P. V. Balaji, Susan Idicula-Thomas, 2007 .

HPV16 E6 variants: Frequency, association with HPV types and in silico analysis of the identified novel variants

S. Idicula-Thomas, Hemant Tongaonkar, Priyanka S. Gokhale, 2014, Journal of medical virology.

Novel homozygous mutations in Desert hedgehog gene in patients with 46,XY complete gonadal dysgenesis and prediction of its structural and functional implications by computational methods.

S. Idicula-Thomas, L. Vasudevan, D. Das, 2011, European journal of medical genetics.

Human Properdin Released By Infiltrating Neutrophils Can Modulate Influenza A Virus Infection

S. Idicula-Thomas, U. Kishore, F. Al-Mohanna, 2021, Frontiers in Immunology.

GeDiPNet: Online resource of curated gene-disease associations for polypharmacological targets discovery

Ram Shankar Barai, Indra Kundu, Khushal Pokar, 2022, Genes and Diseases.

ClassAMP: A Prediction Tool for Classification of Antimicrobial Peptides

Shreyas Karnik, Susan Idicula-Thomas, Vaidyanathan K. Jayaraman, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Human complement Factor H and Properdin act as soluble pattern recognition receptors and differentially modulate SARS-CoV-2 Infection

H. Khan, U. Kishore, C. Kumar, 2023, bioRxiv.

A 5-mer peptide derived from hinge region of hFSHR can function as positive allosteric modulator in vivo.

S. Idicula-Thomas, V. Dighe, K. Prabhudesai, 2020, Biochimica et biophysica acta. Biomembranes.

PCOSKBR2: a database of genes, diseases, pathways, and networks associated with polycystic ovary syndrome

Ram Shankar Barai, S. Idicula-Thomas, Indra Kundu, 2020, Scientific Reports.

FSHR antagonists can trigger a PCOS-like state

K. Venkatesh, S. Idicula-Thomas, V. Dighe, 2021, Systems biology in reproductive medicine.

FSHR activation through small molecule modulators: Mechanistic insights from MD simulations

S. Idicula-Thomas, C. Kumar, Susan Idicula-Thomas, 2023, Comput. Biol. Medicine.

Differential proteomics of circulating extracellular vesicles of placental origin isolated from women with early‐onset preeclampsia reveal aberrant innate immune and hemostasis processes

Aishwarya Rao, Indra Kundu, D. Das, 2024, American journal of reproductive immunology.

A novel 9-bp insertion detected in steroid 21-hydroxylase gene (CYP21A2): prediction of its structural and functional implications by computational methods

S. Idicula-Thomas, A. Maitra, S. Dubey, 2009, Journal of Biomedical Science.

PBIT: Pipeline Builder for Identification of drug Targets for infectious diseases

Ram Shankar Barai, Susan Idicula-Thomas, Gauri Shende, 2016, Bioinform..

Mammalian cysteine‐rich secretory proteins interact with plasma membrane Ca2+ exporter PMCA4b

Ananya A. Breed, Bhakti R. Pathak, Susan Idicula-Thomas, 2023, Andrology.

Phenotypic and genotypic characterization of Factor VII deficiency patients from Western India.

S. Idicula-Thomas, K. Ghosh, S. Shetty, 2009, Clinica chimica acta; international journal of clinical chemistry.

Tubulin acetylation: A novel functional avenue for CDYL in sperm

P. Parte, S. Parab, S. Sonawane, 2017, Cytoskeleton.

Identification of Novel Mutations in HEXA Gene in Children Affected with Tay Sachs Disease from India

F. Sheth, J. Sheth, Sarita Gupta, 2012, PloS one.

PBIT: Pipeline Builder for Identification of drug Targets for infectious diseases

Ram Shankar Barai, Mohammed-Husain M. Bharmal, G. Shende, 2016, Bioinform..

In Silico Study on Binding Specificity of Gonadotropins and Their Receptors: Design of a Novel and Selective Peptidomimetic for Human Follicle Stimulating Hormone Receptor

S. Idicula-Thomas, S. Niazi, A. Sonawani, 2013, PloS one.