Tyler A. Joseph

发表

Inference of Population Structure from Time-Series Genotype Data.

Tyler A Joseph, Itsik Pe'er, I. Pe’er, 2019, American journal of human genetics.

Inference of population structure from ancient DNA

Itsik Pe'er, Tyler A. Joseph, I. Pe’er, 2018, bioRxiv.

FEAST: fast expectation-maximization for microbial source tracking

E. Halperin, I. Pe’er, David Bogumil, 2019, Nature Methods.

An Introduction to Whole-Metagenome Shotgun Sequencing Studies.

I. Pe’er, T. Joseph, Tyler A. Joseph, 2021, Methods in molecular biology.

Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates

I. Pe’er, Tal Korem, T. Joseph, 2022, Genome research.

Genotyping, sequencing and analysis of 140,000 adults from the Mexico City Prospective Study

Alexander E. Lopez, Katherine R. Smith, R. Collins, 2022, bioRxiv.

A deep catalog of protein-coding variation in 985,830 individuals

Alexander E. Lopez, R. Collins, G. Abecasis, 2023, bioRxiv.

Population history from the Neolithic to present on the Mediterranean island of Sardinia: An ancient DNA perspective

Joseph H. Marcus, D. Reich, D. Schlessinger, 2019, bioRxiv.

Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia

Joseph H. Marcus, S. Rubino, D. Reich, 2020, Nature Communications.

Latent Space Temporal Model of Microbial Abundance to Predict Domination and Bacteremia.

I. Pe’er, J. Xavier, T. Joseph, 2018, 1808.10795.

ALS sensitive spinal motor neurons enter a degenerative downward spiral of impaired splicing and proteostasis

Dylan E. Iannitelli, E. Mazzoni, Michael E. Ward, 2022, bioRxiv.

Joint testing of rare variant burden scores using non-negative least squares

G. Abecasis, J. Kosmicki, A. Locke, 2023, bioRxiv.

Methods for modeling the dynamics of microbial communities

T. Joseph, Tyler A. Joseph, 2021 .

FEAST: fast expectation-maximization for microbial source tracking

Eran Halperin, Liat Shenhav, Mike Thompson, 2019, Nature Methods.

A deep catalog of protein-coding variation in 985,830 individuals

Alexander E. Lopez, R. Collins, G. Abecasis, 2023, bioRxiv.

Compositional Lotka-Volterra describes microbial dynamics in the simplex

Eran Halperin, Liat Shenhav, Tyler A Joseph, 2020, PLoS Comput. Biol..

Comparative Population Genomics of African Montane Forest Mammals Support Population Persistence across a Climatic Gradient and Quaternary Climatic Cycles

M. Hickerson, B. Agwanda, John D. Robinson, 2015, PloS one.

Demographic inference under a spatially continuous coalescent model

M. Hickerson, D. Alvarado-Serrano, T. Joseph, 2016, Heredity.

Efficient and Accurate Inference of Mixed Microbial Population Trajectories from Longitudinal Count Data.

Tyler A Joseph, Itsik Pe'er, Amey P Pasarkar, 2020, Cell systems.

Efficient and accurate inference of microbial trajectories from longitudinal count data

Itsik Pe'er, Tyler A. Joseph, Amey P. Pasarkar, 2020, bioRxiv.

Urbanization shapes the demographic history of a native rodent (the white-footed mouse, Peromyscus leucopus) in New York City

Alexander T. Xue, M. Hickerson, J. T. Boehm, 2016, bioRxiv.

Accurate and robust inference of microbial growth dynamics from metagenomic sequencing

I. Pe’er, Tal Korem, T. Joseph, 2021, bioRxiv.