Nicola Bordin

发表

CATH: increased structural coverage of functional space

Radka Svobodová Vareková, Su Datt Lam, Jonathan G. Lees, 2020, Nucleic Acids Res..

SARS‐CoV‐2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms

Bosco K. Ho, B. Rost, S. O’Donoghue, 2021, Molecular systems biology.

Streamlined use of protein structures in variant analysis

S. O’Donoghue, N. Bordin, M. Cowley, 2021 .

SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals

Su Datt Lam, Jonathan G. Lees, Harry M. Scholes, 2020, Scientific Reports.

Systematic modeling of SARS-CoV-2 protein structures

Bosco K. Ho, B. Rost, N. Bordin, 2020 .

SARS-CoV-2 structural coverage map reveals state changes that disrupt host immunity

Bosco K. Ho, B. Rost, S. O’Donoghue, 2020, bioRxiv.

Contrastive learning on protein embeddings enlightens midnight zone

B. Rost, C. Orengo, I. Sillitoe, 2021, bioRxiv.

Pex24 and Pex32 tether peroxisomes to the ER for organelle biogenesis, positioning and segregation

Arjen M. Krikken, N. Bordin, D. Devos, 2020, bioRxiv.

Pex24 and Pex32 are required to tether peroxisomes to the ER for organelle biogenesis, positioning and segregation in yeast

Arjen M. Krikken, N. Bordin, D. Devos, 2020, Journal of Cell Science.

Novel machine learning approaches revolutionize protein knowledge

C. Orengo, N. Bordin, C. Rauer, 2022, Trends in biochemical sciences.

Characterizing and explaining impact of disease-associated mutations in proteins without known structures or structural homologues

C. Orengo, S. Velankar, I. Sillitoe, 2021, bioRxiv.

AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms

Su Datt Lam, B. Rost, C. Orengo, 2022, bioRxiv.

KinFams: De-Novo Classification of Protein Kinases Using CATH Functional Units

C. Orengo, I. Sillitoe, N. Bordin, 2023, Biomolecules.

Clustering FunFams using sequence embeddings improves EC purity

B. Rost, C. Orengo, N. Bordin, 2021, bioRxiv.

Hansenula polymorpha Pex37 is a peroxisomal membrane protein required for organelle fission and segregation

Arjen M. Krikken, N. Bordin, D. Devos, 2019, The FEBS journal.

Planctomycetes attached to algal surfaces: Insight into their genomes.

N. Bordin, D. Devos, O. Lage, 2017, Genomics.

Supporting online material for: Clustering FunFams using sequence embeddings improves EC purity

B. Rost, C. Orengo, M. Heinzinger, 2021 .

Characterizing disease-associated human proteins without available protein structures or homologues

C. Orengo, S. Velankar, I. Sillitoe, 2021 .

Broad functional profiling of fission yeast proteins using phenomics and machine learning

Jonathan G. Lees, Harry M. Scholes, Shaimaa A. Hassan, 2023, bioRxiv.

Closely related Lak megaphages replicate in the microbiomes of diverse animals

Adair L. Borges, J. Banfield, N. Segata, 2021, iScience.

Tracing Evolution Through Protein Structures: Nature Captured in a Few Thousand Folds

Jonathan G. Lees, C. Orengo, J. Lees, 2021, Frontiers in Molecular Biosciences.

Large-scale clustering of AlphaFold2 3D models shines light on the structure and function of proteins.

Nicola Bordin, Andy M. Lau, Christine Orengo, 2023, Molecular cell.

Predicting human and viral protein variants affecting COVID-19 susceptibility and repurposing therapeutics

Su Datt Lam, I. Sillitoe, N. Bordin, 2023, bioRxiv.