M. Olson

发表

Discovery of small molecule inhibitors of MyD88-dependent signaling pathways using a computational screen

Michael S. Lee, D. Waugh, T. Kissner, 2015, Scientific Reports.

Small Molecule Analogues of the parasitic worm product ES-62 interact with the TIR domain of MyD88 to inhibit pro-inflammatory signalling

M. Harnett, W. Harnett, C. Suckling, 2018, Scientific Reports.

Small Molecule Analogues of the parasitic worm product ES ┽ びは interact with the TIR domain of MyDふふ to inhibit pro ┽ in ━ ammatory signalling

M. A. Olson, M. Harnett, W. Harnett, 2018 .

Small-Molecule Probes Targeting the Viral PPxY-Host Nedd4 Interface Block Egress of a Broad Range of RNA Viruses

Michael S. Lee, Jianhong Lu, Ziying Han, 2014, Journal of Virology.

Bimolecular Complementation to Visualize Filovirus VP40-Host Complexes in Live Mammalian Cells: Toward the Identification of Budding Inhibitors

Michael S. Lee, Yuliang Liu, M. A. Olson, 2011, Advances in virology.

Fold prediction of VP24 protein of Ebola and Marburg viruses using de novo fragment assembly.

Mark A Olson, Frank J Lebeda, Michael S. Lee, 2009, Journal of structural biology.

Bacterial superantigens in human disease: structure, function and diversity.

M. A. Olson, S. Bavari, R. Ulrich, 1995, Trends in microbiology.

Free energy determinants of binding the rRNA substrate and small ligands to ricin A-chain.

M. A. Olson, M A Olson, L Cuff, 1999, Biophysical journal.

Identification of Residues Surrounding the Active Site of Type A Botulinum Neurotoxin Important for Substrate Recognition and Catalytic Activity

Leonard A. Smith, M. A. Olson, J. Gilsdorf, 2008, The protein journal.

Mechanically bonded macromolecules.

J. F. Stoddart, W. Goddard, M. A. Olson, 2010, Chemical Society reviews.

Modular synthesis and dynamics of a variety of donor-acceptor interlocked compounds prepared by click chemistry.

William R. Dichtel, J. F. Stoddart, J. Heath, 2007, Chemistry, an Asian journal.

Calculation of absolute protein-ligand binding affinity using path and endpoint approaches.

Mark A Olson, Michael S. Lee, Michael S Lee, 2006, Biophysical journal.

Robust dynamics.

J. F. Stoddart, M. A. Olson, O. Yaghi, 2010, Nature chemistry.

Molecular design of covalent organic frameworks for seawater desalination: A state-of-the-art review

M. A. Olson, A. Trabolsi, Asmaa Jrad, 2023, Chem.

Covalent Organic Framework Nanosheets as Reactive Fillers to Fabricate Free-Standing Polyamide Membranes for Efficient Desalination.

M. A. Olson, Zhongyi Jiang, Hong Wu, 2020, ACS applied materials & interfaces.

Light-driven self-assembly of spiropyran-functionalized covalent organic framework

M. A. Olson, Serdal Kirmizialtin, R. Pasricha, 2023, Nature communications.

Structural and mutational analysis of a monomeric and dimeric form of a single domain antibody with implications for protein misfolding

Dagmar H. Leary, M. A. Olson, P. M. Legler, 2014, Proteins.

Fluorescence turn on amine detection in a cationic covalent organic framework

M. A. Olson, S. Sharma, R. Pasricha, 2022, Nature Communications.

Hydrophobicity Tuning in Isostructural Urchin-Shaped Covalent Organic Framework Nanoparticles by Pore Surface Engineering for Oil–Water Separation

M. A. Olson, S. Sharma, R. Pasricha, 2022, ACS Applied Nano Materials.

Acid-base actuation of [c2]daisy chains.

J. F. Stoddart, M. A. Olson, A. Albrecht-Gary, 2009, Journal of the American Chemical Society.

On the Helix Propensity in Generalized Born Solvent Descriptions of Modeling the Dark Proteome

M. A. Olson, M. Olson, 2017, Front. Mol. Biosci..

Luteolin alleviates non-alcoholic fatty liver disease in rats via restoration of intestinal mucosal barrier damage and microbiota imbalance involving in gut-liver axis.

M. A. Olson, Xiangrong Sun, Yanling Gong, 2021, Archives of biochemistry and biophysics.

Structure refinement of protein model decoys requires accurate side‐chain placement

Mark A Olson, Michael S. Lee, Michael S Lee, 2013, Proteins.

Arranging pseudorotaxanes octahedrally around [60]fullerene.

J. F. Stoddart, M. A. Olson, Florian Beuerle, 2011, Chemical communications.

Rapid and Efficient Removal of Perfluorooctanoic Acid from Water with Fluorine-Rich Calixarene-Based Porous Polymers.

M. A. Olson, Serdal Kirmizialtin, A. O. Yazaydin, 2020, ACS applied materials & interfaces.

Remarkably efficient removal of toxic bromate from drinking water with a porphyrin–viologen covalent organic framework

M. A. Olson, F. Gándara, Dinesh Shetty, 2019, Chemical science.

Assessment of Detection and Refinement Strategies for de novo Protein Structures Using Force Field and Statistical Potentials.

Michael S Lee, Mark A Olson, Michael S. Lee, 2007, Journal of chemical theory and computation.

Fluorescent Molecular Rotors Based on Hinged Anthracene Carboxyimides

M. A. Olson, Yanhai Ni, Wangjian Fang, 2023, Molecules.

Stability of isolated antibody-antigen complexes as a predictive tool for selecting toxin neutralizing antibodies

M. A. Olson, E. Goldman, G. Anderson, 2016, mAbs.

Comparison of volume and surface area nonpolar solvation free energy terms for implicit solvent simulations.

Michael S. Lee, M. A. Olson, M. Olson, 2013, The Journal of chemical physics.

Identification of Small-Molecule Inhibitors of Yersinia pestis Type III Secretion System YscN ATPase

Michael S. Lee, Daniel O. Carmany, M. A. Olson, 2011, PloS one.

Augmented polyhydrazone formation in water by template-assisted polymerization using dual-purpose supramolecular templates

M. A. Olson, J. Mazher, Lei Fang, 2020 .

Bis-Bipyridinium Gemini Surfactant-Based Supramolecular Helical Fibers and Solid State Thermochromism.

M. A. Olson, Yan Xu, Lei Fang, 2018, Chemistry.

Rapid thermally assisted donor-acceptor catenation.

J. F. Stoddart, M. A. Olson, Nezar H. Khdary, 2012, Chemical communications.

Donor-acceptor oligorotaxanes made to order.

Douglas C. Friedman, J. F. Stoddart, W. Goddard, 2011, Chemistry.

A multistate switchable [3]rotacatenane.

Douglas C. Friedman, Michael T. Colvin, J. F. Stoddart, 2011, Chemistry.

Polycatenation under thermodynamic control.

J. F. Stoddart, M. A. Olson, A. Coskun, 2010, Angewandte Chemie.

Thermodynamic forecasting of mechanically interlocked switches.

J. F. Stoddart, M. A. Olson, A. Slawin, 2009, Organic & biomolecular chemistry.

A bistable poly[2]catenane forms nanosuperstructures.

J. F. Stoddart, B. Grzybowski, C. Mirkin, 2009, Angewandte Chemie.

Application of replica exchange umbrella sampling to protein structure refinement of nontemplate models

Mark A. Olson, Michael S. Lee, Michael S. Lee, 2013, J. Comput. Chem..

Versatile hydrochromic fluorescent materials based on a 1,8-naphthalimide integrated fluorophore-receptor system

M. A. Olson, K. Baldridge, N. Finney, 2019, Journal of Materials Chemistry C.

Template-assisted hydrogelation of a dynamic covalent polyviologen-based supramolecular architecture via donor-acceptor interactions

M. A. Olson, Tawfik A Khattab, T. Malah, 2020 .

Solvent-dependent ground-state distributions in a donor-acceptor redox-active bistable [2]catenane

Douglas C. Friedman, J. F. Stoddart, M. A. Olson, 2012 .

Molecular-mechanical switching at the nanoparticle-solvent interface: practice and theory.

J. F. Stoddart, B. Grzybowski, M. A. Olson, 2010, Journal of the American Chemical Society.

Metal nanoparticles functionalized with molecular and supramolecular switches.

J. Fraser Stoddart, Mark A. Olson, Bartosz A. Grzybowski, 2009, Journal of the American Chemical Society.

Development of engineered vaccines effective against structurally related bacterial superantigens.

M. A. Olson, S. Bavari, R. Ulrich, 1998, Vaccine.

Azobenzene-Equipped Covalent Organic Framework: Light-Operated Reservoir.

M. A. Olson, S. Sharma, F. Ravaux, 2019, Journal of the American Chemical Society.

Sequence Tolerance of a Single-Domain Antibody with a High Thermal Stability: Comparison of Computational and Experimental Fitness Profiles

Kendrick B. Turner, M. A. Olson, E. Goldman, 2019, ACS omega.

Sequence Tolerance of a Highly Stable Single Domain Antibody: Comparison of Computational and Experimental Profiles

Kendrick B. Turner, E. Goldman, G. Anderson, 2016 .

Parallel Tempering of Dark Matter from the Ebola Virus Proteome: Comparison of CHARMM36m and CHARMM22 Force Fields with Implicit Solvent

M. Olson, 2017, J. Chem. Inf. Model..

Comparison of Replica Exchange Simulations of a Kinetically Trapped Protein Conformational State and its Native Form.

M. A. Olson, E. Goldman, P. M. Legler, 2016, The journal of physical chemistry. B.

In silico derived small molecules bind the filovirus VP35 protein and inhibit its polymerase cofactor activity.

Wei Xu, Gaya K Amarasinghe, Zbyszek Otwinowski, 2014, Journal of molecular biology.

Covalent organic nanosheets for bioimaging

M. A. Olson, R. Pasricha, F. Gándara, 2018, Chemical science.

Solid-Vapor Interface Engineered Covalent Organic Framework Membranes for Molecular Separation.

M. A. Olson, Li Cao, Zhongyi Jiang, 2020, Journal of the American Chemical Society.

Introduction of a disulfide bond leads to stabilization and crystallization of a ricin immunogen

M. A. Olson, P. M. Legler, J. Compton, 2011, Proteins.

Assembling covalent organic framework membranes via phase switching for ultrafast molecular transport

M. A. Olson, Li Cao, Hong Wu, 2022, Nature Communications.

Staphylococcal enterotoxins A and B share a common structural motif for binding class II major histocompatibility complex molecules

S. Bavari, R. Ulrich, M. Olson, 1995, Nature Structural Biology.

Main-chain donor-acceptor polyhydrazone mediated adsorption of an anionic dye from contaminated water

M. A. Olson, Tawfik A Khattab, T. Malah, 2020 .

Evaluation of Disulfide Bond Position to Enhance the Thermal Stability of a Highly Stable Single Domain Antibody

M. A. Olson, E. Goldman, G. Anderson, 2014, PloS one.

Viologen–cucurbituril host/guest chemistry – redox control of dimerization versus inclusion

M. A. Olson, F. Benyettou, M. Elhabiri, 2021, RSC advances.

An efficient hybrid explicit/implicit solvent method for biomolecular simulations

Mark A Olson, Michael S. Lee, Michael S Lee, 2004, J. Comput. Chem..

Tunable Thermochromism of Multifunctional Charge-Transfer-Based Supramolecular Materials Assembled in Water

M. A. Olson, Yan Xu, Lei Fang, 2017 .

Self-assembly of stimuli-responsive imine-linked calix[4]arene nanocapsules for targeted camptothecin delivery.

M. A. Olson, Dinesh Shetty, A. Trabolsi, 2019, Chemical communications.

Dynamics of superionic conduction: A generalized Langevin equation study of mobile cation channeling and activated barrier crossing in α-AgI

S. Adelman, M. Olson, 1985 .

Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions

Charles L. Brooks, Mark A. Olson, Michael Feig, 2008, J. Comput. Chem..

Predicting Differential Antigen–Antibody Contact Regions Based on Solvent Accessibility

M. A. Olson, F. Lebeda, Frank J. Lebeda, 1997, Journal of protein chemistry.

Finding a new vaccine in the ricin protein fold.

Leonard A. Smith, M. A. Olson, J. Carra, 2004, Protein engineering, design & selection : PEDS.

Unexpected three-state hydrochromism of a donor-acceptor self-complex with fluctuations in relative humidity.

M. A. Olson, L. Roch, Hany F. Nour, 2021, Chemical communications.

The Unusual Photochromic and Hydrochromic Switching Behavior of Cellulose-Embedded 1,8-Naphthalimide-Viologen Derivatives in the Solid-State.

M. A. Olson, K. Baldridge, H. Di, 2021, Chemistry.

Classical and non-classical melatonin receptor agonist-directed micellization of bipyridinium-based supramolecular amphiphiles in water.

M. A. Olson, K. Baldridge, Zhimin Sun, 2020, Soft matter.

Versatile Thermochromic Supramolecular Materials Based on Competing Charge Transfer Interactions

M. A. Olson, M. Firestone, Yan Xu, 2016 .

A neutral redox-switchable [2]rotaxane.

Douglas C. Friedman, C. Gothard, Youssry Y. Botros, 2011, Organic & biomolecular chemistry.

Highly stable tetrathiafulvalene radical dimers in [3]catenanes.

Douglas C. Friedman, Michael T. Colvin, J. F. Stoddart, 2010, Nature chemistry.

Adsorption isotherms and kinetic studies for the removal of toxic reactive dyestuffs from contaminated water using a viologen-based covalent polymer

M. A. Olson, Tawfik A Khattab, E. Radwan, 2021, New Journal of Chemistry.

Efficient Conformational Sampling in Explicit Solvent Using a Hybrid Replica Exchange Molecular Dynamics Method.

Michael S. Lee, M. A. Olson, A. Wallqvist, 2012, Journal of chemical theory and computation.

Acid-base actuation of [c2]daisy chains.

Ying-Wei Yang, Lei Fang, M. Elhabiri, 2009, Journal of the American Chemical Society.

Rapid thermally assisted donor-acceptor catenation.

Nezar H. Khdary, K. Hartlieb, C. Bruns, 2012, Chemical communications.

Isolation by crystallization of translational isomers of a bistable donor-acceptor [2]catenane

J. F. Stoddart, W. Goddard, M. A. Olson, 2010, Proceedings of the National Academy of Sciences.

Evaluation of Unrestrained Replica-Exchange Simulations Using Dynamic Walkers in Temperature Space for Protein Structure Refinement

Michael S. Lee, M. A. Olson, M. Olson, 2014, PloS one.

Protein Folding Simulations Combining Self-Guided Langevin Dynamics and Temperature-Based Replica Exchange.

Michael S. Lee, M. Olson, 2010, Journal of Chemical Theory and Computation.

Conformational Selection of a Polyproline Peptide by Ebola Virus VP30

M. Olson, 2018, Proteomics.

Can template-based protein models guide the design of sequence fitness for enhanced thermal stability of single domain antibodies?

Kendrick B. Turner, M. A. Olson, E. Goldman, 2015, Protein engineering, design & selection : PEDS.

Comparison between self‐guided Langevin dynamics and molecular dynamics simulations for structure refinement of protein loop conformations

Mark A. Olson, Michael S. Lee, Sidhartha Chaudhury, 2011, J. Comput. Chem..

Comparison of two adaptive temperature-based replica exchange methods applied to a sharp phase transition of protein unfolding-folding.

Mark A Olson, Michael S. Lee, Michael S Lee, 2011, The Journal of chemical physics.

Free-energy profiles of membrane insertion of the M2 transmembrane peptide from influenza A virus.

Anders Wallqvist, Mark A Olson, Michael S. Lee, 2008, Biophysical journal.

Simulation analysis of formycin 5′-monophosphate analog substrates in the ricin A-chain active site

Mark A. Olson, Dallas C. Hack, John P. Scovill, 1995, J. Comput. Aided Mol. Des..

Conformational energy landscape of the acyl pocket loop in acetylcholinesterase: a Monte Carlo-generalized Born model study.

M. A. Olson, C. Millard, L. Carlacci, 2004, Biophysical chemistry.

Discovery of small molecule inhibitors of MyD88-dependent signaling pathways using a computational screen

Michael S. Lee, M. A. Olson, D. Waugh, 2015, Scientific Reports.

Kinetic, Mutational, and Structural Studies of the Venezuelan Equine Encephalitis Virus Nonstructural Protein 2 Cysteine Protease.

Michael S. Lee, Dagmar H. Leary, M. Ferrer, 2016, Biochemistry.

Melatonin-directed micellization: a case for tryptophan metabolites and their classical bioisosteres as templates for the self-assembly of bipyridinium-based supramolecular amphiphiles in water.

K. Baldridge, L. Roch, Hui-Fang Cui, 2018, Soft matter.