Alberto Santos-Zavaleta

发表

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2012, Nucleic Acids Res..

The EcoCyc Database in 2021

Suzanne M. Paley, Víctor H. Tierrafría, J. Collado-Vides, 2021, Frontiers in Microbiology.

The EcoCyc Database.

J. Collado-Vides, P. Midford, P. Karp, 2018, EcoSal Plus.

EcoCyc: fusing model organism databases with systems biology

Peter D. Karp, Ian T. Paulsen, Julio Collado-Vides, 2012, Nucleic Acids Res..

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2018, Nucleic Acids Res..

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2010, Nucleic Acids Res..

fusing model organism databases with systems biology.

Araceli M. Huerta, J. Collado-Vides, P. Karp, 2012 .

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

Peter D. Karp, Ian T. Paulsen, Julio Collado-Vides, 2016, Nucleic Acids Res..

EcoCyc: a comprehensive database of Escherichia coli biology

Peter D. Karp, Ian T. Paulsen, Julio Collado-Vides, 2010, Nucleic Acids Res..

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2005, Nucleic Acids Res..

A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

Julio Collado-Vides, Socorro Gama-Castro, Bernhard O Palsson, 2018, BMC Biology.

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

Fabio Rinaldi, Julio Collado-Vides, César Bonavides-Martínez, 2015, Nucleic Acids Res..

EcoCyc: A comprehensive view of Escherichia coli biology

Peter D. Karp, Ian T. Paulsen, Julio Collado-Vides, 2008, Nucleic Acids Res..

Bioinformatics Resources for the Study of Gene Regulation in Bacteria

J. Collado-Vides, Irma Martínez-Flores, V. Jiménez-Jacinto, 2008, Journal of bacteriology.

Towards a unified resource for transcriptional regulation in Escherichia coli K-12: Incorporating high throughput-generated binding data within the classic framework of regulation of initiation of transcription in RegulonDB

Víctor H. Tierrafría, David A. Velázquez-Ramírez, J. Collado-Vides, 2017, bioRxiv.

Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12

Fabio Rinaldi, Simon Clematide, Julio Collado-Vides, 2014, Database J. Biol. Databases Curation.

The EcoCyc Database

Suzanne M. Paley, Socorro Gama-Castro, Julio Collado-Vides, 2002, Nucleic Acids Res..

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2004, Nucleic Acids Res..

Evidence classification of high-throughput protocols and confidence integration in RegulonDB

Julio Collado-Vides, Heladia Salgado, Alberto Santos-Zavaleta, 2013, Database J. Biol. Databases Curation.

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2001, Nucleic Acids Res..

RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli

Julio Collado-Vides, Jacques van Helden, Heladia Salgado, 1999, Nucleic Acids Res..

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation

Julio Collado-Vides, César Bonavides-Martínez, Socorro Gama-Castro, 2007, Nucleic Acids Res..

Multidimensional annotation of the Escherichia coli K-12 genome

Peter D. Karp, Julio Collado-Vides, Suzanne M. Paley, 2007, Nucleic acids research.

A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

Víctor H. Tierrafría, David A. Velázquez-Ramírez, J. Collado-Vides, 2018, BMC Biology.

PromEC: An updated database of Escherichia coli mRNA promoters with experimentally identified transcriptional start sites

Hanah Margalit, Gill Bejerano, Alberto Santos-Zavaleta, 2001, Nucleic Acids Res..

RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12

J. Collado-Vides, J. Gelpí, S. Gama-Castro, 2023, Nucleic acids research.

The EcoCyc Database

Suzanne M. Paley, Araceli M. Huerta, Daniel S. Weaver, 2014, EcoSal Plus.

The EcoCyc Database (2023)

Suzanne M. Paley, J. Collado-Vides, P. Midford, 2023, EcoSal Plus.