Shalima Nair

发表

DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns.

Cathryn M. Gould, Timothy J. Peters, M. Rubin, 2019, Cancer cell.

Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer

Cathryn M. Gould, Timothy J. Peters, E. Zotenko, 2019, Nature Communications.

Acetylated histone variant H2A.Z is involved in the activation of neo-enhancers in prostate cancer

Fabian A. Buske, Cathryn M. Gould, J. Kench, 2017, Nature Communications.

Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer.

M. Robinson, K. Patterson, S. Clark, 2012, Genome research.

Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements

Terence P. Speed, Jenny Song, Timothy J. Peters, 2018, Bioinform..

Mapping the regulatory sequences controlling 93 breast cancer-associated miRNA genes leads to the identification of two functional promoters of the Hsa-mir-200b cluster, methylation of which is associated with metastasis or hormone receptor status in advanced breast cancer

S. Clark, A. Dobrovic, J. French, 2012, Oncogene.

Quantitative comparison of DNA methylation assays for biomarker development and clinical applications

Kimberly Walter, David S. Shames, Peter W. Laird, 2016, Nature Biotechnology.

Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value

Rodney J Scott, Matt Trau, Mark D Robinson, 2015, Nature Communications.

Transient and Permanent Reconfiguration of Chromatin and Transcription Factor Occupancy Drive Reprogramming.

R. Lister, S. Clark, Alex de Mendoza, 2017, Cell stem cell.

Widespread Aberrant Alternative Splicing despite Molecular Remission in Chronic Myeloid Leukaemia Patients

U. Schmitz, J. Rasko, S. Clark, 2020, medRxiv.

MicroRNA Alterations and Associated Aberrant DNA Methylation Patterns across Multiple Sample Types in Oral Squamous Cell Carcinoma

Susan J. Clark, Jørgen Kjems, Jesper B. Bramsen, 2011, PloS one.

DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity.

Ira W. Deveson, Cathryn M. Gould, E. Zotenko, 2021, Cell reports.

DNA methylation is required to maintain DNA replication timing precision and 3D genome integrity

Ira W. Deveson, Cathryn M. Gould, E. Zotenko, 2020, bioRxiv.

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias

Dario Strbenac, Mark D Robinson, Clare Stirzaker, 2011, Epigenetics.

Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine-resistant breast cancer

Cathryn M. Gould, S. Clark, Phuc-Loi Luu, 2020, Nature Communications.

Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten

J. Kench, J. Rasko, G. Chenevix-Trench, 2018, Epigenetics & Chromatin.

Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation.

Dario Strbenac, Terence P Speed, Mark D Robinson, 2010, Genome research.

Methylation-capture and Next-Generation Sequencing of free circulating DNA from human plasma

N. Hacker, S. Clark, G. Samimi, 2014, BMC Genomics.

Epigenetic therapy targets the 3D epigenome in endocrine-resistant breast cancer

Anthony D. Schmitt, S. Clark, T. Hickey, 2021, bioRxiv.

Epigenetic therapy suppresses endocrine-resistant breast tumour growth by re-wiring ER-mediated 3D chromatin interactions

S. Clark, T. Hickey, N. Portman, 2021 .

Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten

J. Kench, J. Rasko, G. Chenevix-Trench, 2018, Epigenetics & Chromatin.

Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes

Denis C. Bauer, Timothy J. Peters, E. Zotenko, 2019, Scientific Reports.

Macrophage development and activation involve coordinated intron retention in key inflammatory regulators

U. Schmitz, J. Rasko, S. Clark, 2020, Nucleic acids research.

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA

Cathryn M. Gould, E. Zotenko, S. Clark, 2017, Epigenetics & Chromatin.

Enduring epigenetic landmarks define the cancer microenvironment

Timothy J. Peters, J. Kench, E. Zotenko, 2018, Genome research.

Multiplex bisulfite PCR resequencing of clinical FFPE DNA

M. Trau, D. Korbie, C. Stirzaker, 2015, Clinical Epigenetics.

Multiplex bisulfite PCR resequencing of clinical

S. Clark, M. Trau, D. Korbie, 2015 .

Epigenetic-induced repression of microRNA-205 is associated with MED1 activation and a poorer prognosis in localized prostate cancer

J. Kench, K. Patterson, S. Clark, 2013, Oncogene.

Epigenetic therapy suppresses endocrine-resistant breast tumour growth by re-wiring ER-mediated 3D chromatin interactions

S. Clark, T. Hickey, N. Portman, 2021 .

Replication timing shapes the cancer epigenome and the nature of chromosomal rearrangements

Cathryn M. Gould, Susan J. Clark, Clare Stirzaker, 2018, bioRxiv.

Homeostasis of glutamate neurotransmission is altered in Drosophila Inositol 1,4,5-trisphosphate receptor mutants

G. Hasan, S. Nair, Neha Agrawal, 2007, Invertebrate Neuroscience.

1721 Effects of supplementing olive pomace as a feed additive on weight gain in Capris aegagrus hircus

S. F. Kelley, J. Leatherwood, K. Stutts, 2016 .

Functional properties of the Drosophila melanogaster inositol 1,4,5-trisphosphate receptor mutants.

G. Hasan, S. Srikanth, I. Bezprozvanny, 2004, Biophysical journal.

Genetic Dissection of itpr Gene Function Reveals a Vital Requirement in Aminergic Cells of Drosophila Larvae

R. Srinivas, G. Hasan, R. Joshi, 2004, Genetics.

Androgen receptor expression predicts breast cancer survival: the role of genetic and epigenetic events

S. Clark, S. Edwards, J. French, 2012, BMC Cancer.

Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA

Cathryn M. Gould, E. Zotenko, S. Clark, 2017, Epigenetics & Chromatin.

The potential of epigenetic therapy to target the 3D epigenome in endocrine-resistant breast cancer

R. Pidsley, N. Portman, Sarah Alexandrou, 2024, Nature structural & molecular biology.

Characterisation and reproducibility of the HumanMethylationEPIC v2.0 BeadChip for DNA methylation profiling

R. Pidsley, C. Stirzaker, Jenny Song, 2024, BMC genomics.