Jakob Russel

发表

Unexpected diversity among small-scale sample replicates of defined plant root compartments

S. Sørensen, J. Russel, J. Madsen, 2021, The ISME Journal.

CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci.

Shiraz A Shah, Shiraz A. Shah, Jakob Russel, 2020, The CRISPR journal.

Deciphering links between bacterial interactions and spatial organization in multispecies biofilms

S. Sørensen, A. Brejnrod, Samuel Jacquiod, 2019, The ISME Journal.

Coexistence facilitates interspecific biofilm formation in complex microbial communities.

S. Sørensen, Helle Sørensen, J. Russel, 2016, Environmental microbiology.

Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota

S. Sørensen, H. Bisgaard, M. Rasmussen, 2020, Microbiome.

Type IV CRISPR–Cas systems are highly diverse and involved in competition between plasmids

Shiraz A. Shah, S. Sørensen, R. Garrett, 2019, bioRxiv.

Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil

Samuel Jacquiod, A. Priemé, F. Ekelund, 2019, The ISME Journal.

The T-shirt microbiome is distinct between individuals and shaped by washing and fabric type.

Martin Steen Mortensen, J. Russel, Eva Baggesgaard Sterndorff, 2020, Environmental research.

The developing airway and gut microbiota in early life is influenced by age of older siblings

Shiraz A. Shah, S. Sørensen, K. Bønnelykke, 2022, Microbiome.

The role of plasmids in the gut microbiome during the first year of life

S. Sørensen, J. Nesme, J. Russel, 2023, bioRxiv.

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

Peter C. Fineran, Shiraz A. Shah, S. Sørensen, 2021, bioRxiv.

Enhanced bacterial mutualism through an evolved biofilm phenotype

S. Sørensen, Jakob Herschend, J. Madsen, 2018, The ISME Journal.

Conjugative dissemination of plasmids in rapid sand filters: a trojan horse strategy to enhance pesticide degradation in groundwater treatment

S. Sørensen, J. Nesme, J. Russel, 2020, bioRxiv.

Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps

S. Sørensen, A. Brejnrod, J. Russel, 2019, Microbial Ecology.

Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition

Shiraz A. Shah, H. Bisgaard, M. Rasmussen, 2023, bioRxiv.

Bacteriophages suppress CRISPR-Cas immunity using RNA-based anti-CRISPRs.

J. Madsen, Robert D. Fagerlund, David Mayo-Muñoz, 2023, Nature.

Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes

S. Sørensen, J. Nesme, J. Russel, 2021, mBio.

The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition.

Shiraz A. Shah, S. Sørensen, H. Bisgaard, 2021, Cell host & microbe.

Prophages in the infant gut are largely induced, and may be functionally relevant to their hosts

Shiraz A. Shah, S. Sørensen, H. Bisgaard, 2021, bioRxiv.

Priority of Early Colonizers but No Effect on Cohabitants in a Synergistic Biofilm Community

S. Sørensen, J. Russel, M. Burmølle, 2019, Front. Microbiol..

Deciphering links between bacterial interactions and spatial organization in multispecies biofilms

S. Sørensen, A. Brejnrod, Samuel Jacquiod, 2019, The ISME Journal.

Enhanced bacterial mutualism through an evolved biofilm phenotype

S. Sørensen, Jakob Herschend, J. Madsen, 2018, The ISME Journal.

Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm

S. Sørensen, J. Russel, M. Burmølle, 2018, The ISME Journal.

Type IV-A3 CRISPR-Cas systems drive inter-plasmid conflicts by acquiring spacers in trans

Chase L. Beisel, S. Sørensen, E. Rocha, 2023, bioRxiv.

Low‐abundant species facilitates specific spatial organization that promotes multispecies biofilm formation

S. Sørensen, J. Russel, M. Burmølle, 2017, Environmental microbiology.

Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community

K. Foster, B. Svensson, J. Nesme, 2022, npj Biofilms and Microbiomes.

Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil

Samuel Jacquiod, A. Priemé, F. Ekelund, 2019, The ISME Journal.

Fungi and bacteria in the beds of rural and urban infants correlate with later risk of atopic diseases

Shiraz A. Shah, K. Bønnelykke, H. Bisgaard, 2023, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

Interspecific interactions facilitate keystone species in a multispecies biofilm that promotes plant growth

J. Nesme, Xuanji Li, H. L. Røder, 2024, The ISME journal.

Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions

S. Sørensen, K. Rumbaugh, A. Horswill, 2018, Proceedings of the National Academy of Sciences.

Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults

A. Brejnrod, J. Thorsen, Xuanji Li, 2023, Nature communications.

DAtest: a framework for choosing differential abundance or expression method

Hans Bisgaard, Asker Brejnrod, Søren J. Sørensen, 2018, bioRxiv.

IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

S. Sørensen, B. Smets, J. Nesme, 2021, Molecular ecology.

Environmental shaping of the bacterial and fungal community in 1 infant bed dust and correlations with the airway microbiota 2

H. Bisgaard, M. Rasmussen, M. Hjelmsø, 2020 .

Antagonism correlates with metabolic similarity in diverse bacteria

S. Sørensen, J. Russel, M. Burmølle, 2017, Proceedings of the National Academy of Sciences.