Joel Rozowsky

发表

Novel approaches for bioinformatic analysis of salivary RNA sequencing data for development

Mark Gerstein, Sung Kim, Xiaoyan Wang, 2018, Bioinform..

Extending gene ontology in the context of extracellular RNA and vesicle communication

Kei-Hoi Cheung, Andrew I. Su, Kasey Vickers, 2016, Journal of biomedical semantics.

A cross-organism framework for supervised enhancer prediction with epigenetic pattern recognition and targeted validation

Mark Gerstein, Chengfei Yan, Axel Visel, 2018, bioRxiv.

An approach to comparing tiling array and high throughput sequencing technologies for genomic transcript mapping

Mark Gerstein, Ashish Agarwal, Joel Rozowsky, 2009, BMC Research Notes.

An integrative ENCODE resource for cancer genomics

Jie Xu, Lucas Lochovsky, Donghoon Lee, 2019, Nature Communications.

An integrative ENCODE resource for cancer genomics

Patrick McGillivray, Donghoon Lee, Mark Gerstein, 2020, Nature Communications.

Perspectives on ENCODE

Xintao Wei, Christopher B. Burge, Jason Liu, 2020, Nature.

An approach to compare genome tiling microarray and MPSS sequencing data for transcript mapping

Mark Gerstein, Joel Rozowsky, Rajkumar Sasidharan, 2009, BMC Research Notes.

Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data.

Raymond K. Auerbach, Kevin Y Yip, Zhi John Lu, 2011, Genome research.

The real cost of sequencing: scaling computation to keep pace with data generation

Jing Zhang, Mark Gerstein, Farren J. Isaacs, 2016, Genome biology.

MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework

Mark Gerstein, Arif Harmanci, Joel Rozowsky, 2014, Genome Biology.

Erratum to: The real cost of sequencing: scaling computation to keep pace with data generation

Jing Zhang, Mark Gerstein, Daifeng Wang, 2016, Genome Biology.

Diverse human extracellular RNAs are widely detected in human plasma

Mark Gerstein, Robert Kitchen, Daniel Levy, 2016, Nature Communications.

Mismatch oligonucleotides in human and yeast: guidelines for probe design on tiling microarrays

Mark Gerstein, Justin Jee, Michael R. Seringhaus, 2008, BMC Genomics.

Temporal Dynamics of Collaborative Networks in Large Scientific Consortia.

Mark Gerstein, Daifeng Wang, Koon-Kiu Yan, 2016, Trends in genetics : TIG.

Comparative analysis of pseudogenes across three phyla

Yan Zhang, Mark Diekhans, Jennifer Harrow, 2014, Proceedings of the National Academy of Sciences.

Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome

Mark Gerstein, Joel Rozowsky, Alexander E Urban, 2008, Genome Biology.

Tilescope: online analysis pipeline for high-density tiling microarray data

Mark Gerstein, Hugo Y. K. Lam, Joel Rozowsky, 2007, Genome Biology.

Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms

Mark Gerstein, Michael R. Seringhaus, Anthony R. Borneman, 2007, Functional & Integrative Genomics.

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing

Raymond K. Auerbach, Mark Gerstein, Joel Rozowsky, 2009 .

Comparative Analysis of the Transcriptome across Distant Species

Peter J. Bickel, Raymond K. Auerbach, Peter J. Park, 2014, Nature.

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.

Mark Gerstein, Kevin Struhl, Zhiping Weng, 2008, Genome research.

Divergence of transcription factor binding sites across related yeast species.

Mark Gerstein, Haiyuan Yu, Michael R. Seringhaus, 2007, Science.

OrthoClust: an orthology-based network framework for clustering data across multiple species

Mark Gerstein, Daifeng Wang, Koon-Kiu Yan, 2014, Genome Biology.

Structuring supplemental materials in support of reproducibility

Mark Gerstein, Victoria Stodden, Dov Greenbaum, 2017, Genome Biology.