Koen Deforche

发表

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences

Tulio de Oliveira, Pieter Libin, Anne-Mieke Vandamme, 2009, Nucleic Acids Res..

Estimating the Relative Contribution of dNTP Pool Imbalance and APOBEC3G/3F Editing to HIV Evolution In Vivo

Yves Moreau, Anne-Mieke Vandamme, Beth Shapiro, 2007, J. Comput. Biol..

Genome Detective: an automated system for virus identification from high-throughput sequencing data

Tulio de Oliveira, Anne-Mieke Vandamme, Sam Nooij, 2018, Bioinform..

Estimating the individualized HIV-1 genetic barrier to resistance using a nelfinavir fitness landscape

Yves Moreau, Kristof Theys, Anne-Mieke Vandamme, 2009, BMC Bioinformatics.

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Kristof Theys, Koen Deforche, Pieter J. K. Libin, 2018, bioRxiv.

SANTA-SIM: Simulating Viral Sequence Evolution Dynamics Under Selection and Recombination

Pieter Libin, Kristof Theys, Andrew Rambaut, 2018 .

ASANOD: Automated Sequence Anomaly Detection tool

Kristof Theys, Koen Deforche, Pieter Libin, 2015 .

Estimation of an in vivo fitness landscape experienced by HIV-1 under drug selective pressure useful for prediction of drug resistance evolution during treatment

Yves Moreau, Anne-Mieke Vandamme, Ricardo Camacho, 2008, Bioinform..

RegaDB: community-driven data management and analysis for infectious diseases

Jean Ruelle, Peter M. A. Sloot, Stefan Wesner, 2013, Bioinform..

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes

Tulio de Oliveira, Sara Cleemput, Koen Deforche, 2020, Bioinform..

An automated genotyping system for analysis of HIV-1 and other microbial sequences

Tulio de Oliveira, Christopher J. Seebregts, David A. van de Vijver, 2005, Bioinform..

SlidingBayes: exploring recombination using a sliding window approach based on Bayesian phylogenetic inference

Anne-Mieke Vandamme, Philippe Lemey, Koen Deforche, 2005, Bioinform..

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Pieter Libin, Kristof Theys, Koen Deforche, 2018 .

SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination

Kristof Theys, Alexei J Drummond, Andrew Rambaut, 2018, bioRxiv.

Analysis of HIV-1 pol sequences using Bayesian Networks: implications for drug resistance

Yves Moreau, Tomi Silander, Anne-Mieke Vandamme, 2006, Bioinform..

Discordances between Interpretation Algorithms for Genotypic Resistance to Protease and Reverse Transcriptase Inhibitors of Human Immunodeficiency Virus Are Subtype Dependent

Lynn Morris, Anne-Mieke Vandamme, Praphan Phanuphak, 2006, Antimicrobial Agents and Chemotherapy.

A Public HTLV-1 Molecular Epidemiology Database for Sequence Management and Data Mining

Anne-Mieke Vandamme, Luiz Carlos Junior Alcantara, Koen Deforche, 2012, PloS one.

Protease mutation M89I/V is linked to therapy failure in patients infected with the HIV-1 non-B subtypes C, F or G

Anne-Mieke Vandamme, Koen Deforche, Joke Snoeck, 2005, AIDS.

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools.

Anne-Mieke Vandamme, Stijn Imbrechts, Tulio de Oliveira, 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Estimating an In Vivo Fitness Landscape During Protease and Reverse Transcriptase Treatment from Observed Genetic Evolution to Predict Accumulation of Mutations under Selective Pressure

Yves Moreau, Kristof Theys, Anne-Mieke Vandamme, 2007 .

Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors are subtype dependent

Lynn Morris, Anne-Mieke Vandamme, Praphan Phanuphak, 2004 .

Prevalence and epidemiology of HIV type 1 drug resistance among newly diagnosed therapy-naive patients in Belgium from 2003 to 2006.

Anne-Mieke Vandamme, Katrien Fransen, Inge Derdelinckx, 2008, AIDS research and human retroviruses.

Investigation of Baseline Susceptibility to Protease Inhibitors in HIV-1 Subtypes C, F, G and Crf02_Ag

Anne-Mieke Vandamme, Koen Deforche, Ricardo Jorge Camacho, 2005, Antiviral therapy.

An alignment method for nucleic acid sequences against annotated genomes

Koen Deforche, K. Deforche, 2017, bioRxiv.

Modelled in vivo HIV Fitness under drug Selective Pressure and Estimated Genetic Barrier Towards Resistance are Predictive for Virological Response

Yves Moreau, Kristof Theys, Anne-Mieke Vandamme, 2008, Antiviral therapy.

A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes

Ann Nowé, Kristof Theys, Anne-Mieke Vandamme, 2019, PLoS neglected tropical diseases.

Impact of HIV-1 protease mutations A71V/T and T74S on M89I/V-mediated protease inhibitor resistance in subtype G isolates.

Anne-Mieke Vandamme, Koen Deforche, Kristel Van Laethem, 2008, The Journal of antimicrobial chemotherapy.