Nitin S. Baliga

发表

QS437. Integrated Biological and Computational Analysis of Important But Largely Under-Studied Organisms

Michael H. Johnson, Marc T. Facciotti, David J. Reiss, 2008 .

Model-based deconvolution of genome-wide DNA binding

Marc T. Facciotti, David J. Reiss, Nitin S. Baliga, 2008, Bioinform..

Architecture for interoperable software in biology

Nitin S. Baliga, J. Christopher Bare, N. Baliga, 2012, Briefings Bioinform..

miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling

Nitin S. Baliga, J. Christopher Bare, Christopher Plaisier, 2011, Nucleic Acids Res..

Metallochaperones Regulate Intracellular Copper Levels

Sunil Kumar, Min Pan, Adam P. Arkin, 2013, PLoS Comput. Biol..

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications

Amy K. Schmid, Nitin S. Baliga, J. Christopher Bare, 2007, BMC Bioinformatics.

Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis

Linh Hoang, Min Pan, Marc T. Facciotti, 2010, BMC Systems Biology.

Inference of Bacterial Small RNA Regulatory Networks and Integration with Transcription Factor-Driven Regulatory Networks

Richard Bonneau, Nitin S. Baliga, Patrick Eichenberger, 2019, mSystems.

Data-driven integration of genome-scale regulatory and metabolic network models

Nathan D. Price, Nitin S. Baliga, Sascha Schäuble, 2015, Front. Microbiol..

Network portal: a database for storage, analysis and visualization of biological networks

Ning Jiang, David J. Reiss, Nitin S. Baliga, 2013, Nucleic Acids Res..

GTC: A web server for integrating systems biology data with web tools and desktop applications

Dan Tenenbaum, Nitin S. Baliga, J. Christopher Bare, 2010, Source Code for Biology and Medicine.

Systems Concepts Effectively Taught Using Systems Practices

Nitin S. Baliga, Claudia Ludwig, 2008 .

The Gaggle: An open-source software system for integrating bioinformatics software and data sources

David J. Reiss, Nitin S. Baliga, Richard Bonneau, 2006, BMC Bioinformatics.

Integration and visualization of systems biology data in context of the genome

David J. Reiss, Dan Tenenbaum, Nitin S. Baliga, 2010, BMC Bioinformatics.

Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions

David J. Reiss, Nitin S. Baliga, Alexander V. Ratushny, 2015, BMC Systems Biology.

Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks

David J. Reiss, Nitin S. Baliga, Richard Bonneau, 2006, BMC Bioinformatics.

Evolution of context dependent regulation by expansion of feast/famine regulatory proteins

Min Pan, Marc T. Facciotti, David J. Reiss, 2014, BMC Systems Biology.

Halobacterium salinarum NRC-1 PeptideAtlas: strategies for targeted proteomics

Marc T. Facciotti, Kenia Whitehead, Amy K. Schmid, 2008 .

A Major Role for Nonenzymatic Antioxidant Processes in the Radioresistance of Halobacterium salinarum

Nitin S. Baliga, Jocelyne DiRuggiero, Amardeep Kaur, 2011, Journal of bacteriology.

Biomolecular Interaction Networks Cytoscape : A Software Environment for Integrated Models of

Benno Schwikowski, Nada Amin, Trey Ideker, 2003 .

Molecular mechanisms of system responses to novel stimuli are predictable from public data

Jung-Hsien Chiang, Nitin S. Baliga, Alexander V. Ratushny, 2013, Nucleic acids research.

Erosion of functional independence early in the evolution of a microbial mutualism

Nitin S. Baliga, Judy D. Wall, David A. Stahl, 2014, Proceedings of the National Academy of Sciences.

Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

Nathan D. Price, Nitin S. Baliga, Mónica V. Orellana, 2015, Biotechnology for Biofuels.

cMonkey2: Automated, systematic, integrated detection of co-regulated gene modules for any organism

Nitin S. Baliga, Wei-Ju Wu, David J. Reiss, 2015, Nucleic acids research.

Diurnally Entrained Anticipatory Behavior in Archaea

Kenia Whitehead, Min Pan, Richard Bonneau, 2009, PloS one.

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

Nitin S. Baliga, Paul Wilmes, Patrick May, 2014, Nature Communications.

Functional Genomics, Proteomics, Metabolomics and Bioinformatics for Systems Biology

Charles Auffray, Reinhard Schneider, Nitin S. Baliga, 2013 .

On different aspects of network analysis in systems biology

Charles Auffray, Nitin S. Baliga, Wiktor Jurkowski, 2013 .

A high-resolution network model for global gene regulation in Mycobacterium tuberculosis

Nitin S. Baliga, William J.R. Longabaugh, Kyle J. Minch, 2014, Nucleic acids research.

Peroxiredoxins are conserved markers of circadian rhythms

Andrew J. Millar, Min Pan, Nitin S. Baliga, 2012, Nature.

Systems Biology Experimental Design - Considerations for Building Predictive Gene Regulatory Network Models for Prokaryotic Systems

Marc T. Facciotti, Richard Bonneau, Nitin S. Baliga, 2004 .

The DNA-binding network of Mycobacterium tuberculosis

Nathan D. Price, Nitin S. Baliga, James E. Galagan, 2015, Nature Communications.