John C Marioni

发表

Computational assignment of cell-cycle stage from single-cell transcriptome data.

Sarah A Teichmann, Antonio Scialdone, Kedar N Natarajan, 2015, Methods.

Detection and removal of barcode swapping in single-cell RNA-seq data

John C Marioni, Karsten Bach, Jonathan A Griffiths, 2017, Nature Communications.

Normalizing single-cell RNA sequencing data: challenges and opportunities

Sandrine Dudoit, Davide Risso, John C Marioni, 2017, Nature Methods.

Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors

Laleh Haghverdi, John C Marioni, Aaron T L Lun, 2018, Nature Biotechnology.

EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

Samantha Riesenfeld, John C Marioni, Aaron T L Lun, 2019, Genome Biology.

Testing the mean matrix in high‐dimensional transposable data

Anestis Touloumis, Simon Tavaré, John C Marioni, 2014, Biometrics.

Random monoallelic gene expression increases upon embryonic stem cell differentiation.

Jan H Bergmann, Paul Flicek, John C Marioni, 2014, Developmental cell.

Contributions to drug resistance in glioblastoma derived from malignant cells in the sub-ependymal zone.

Anestis Touloumis, Andrea Sottoriva, Simon Tavaré, 2015, Cancer research.

COMRADES determines in vivo RNA structures and interactions

Aaron T. L. Lun, Ian Goodfellow, John C Marioni, 2018, Nature Methods.

Comparative RNA sequencing reveals substantial genetic variation in endangered primates.

Páll Melsted, Matthew Stephens, Joseph K. Pickrell, 2012, Genome research.

Challenges in measuring and understanding biological noise

John C Marioni, Nils Eling, J. Marioni, 2019, Nature Reviews Genetics.

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

John C Marioni, Duncan T Odom, Nils Eling, 2018, bioRxiv.

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor

John C Marioni, Davis J. McCarthy, Aaron T L Lun, 2016, F1000Research.

The pitfalls of platform comparison: DNA copy number array technologies assessed

James Hadfield, Carlos Caldas, Mark J Dunning, 2009, BMC Genomics.

Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data

Berthold Göttgens, John C Marioni, Aaron T L Lun, 2017, bioRxiv.

Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis

Aaron T. L. Lun, Chris Bakal, John C Marioni, 2017, bioRxiv.

Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis

John C Marioni, Duncan T Odom, Nils Eling, 2018, Nature Communications.

Extensive compensatory cis-trans regulation in the evolution of mouse gene expression

Paul Flicek, Alvis Brazma, Klara Stefflova, 2012, Genome research.