Makoto Taiji

发表

PetaFLOPS computing

Toshikazu Ebisuzaki, Robert S. Germain, Makoto Taiji, 2004, CACM.

Femtosecond spectroscopy of acidified and neutral bacteriorhodopsin

Makoto Taiji, Takayoshi Kobayashi, Mamoru Terauchi, 1991, Other Conferences.

Fast and accurate molecular dynamics simulation of a protein using a special-purpose computer

Makoto Taiji, Yuto Komeiji, Masami Uebayasi, 1997, J. Comput. Chem..

Circuit and physical design of the MDGRAPE-4 on-chip network links

Makoto Taiji, Duraid Madina, 2008, SLIP '08.

GRAPE-4: a teraFLOPS massively parallel special-purpose computer system for astrophysical N-body simulations

Toshikazu Ebisuzaki, Makoto Taiji, Junichiro Makino, 1994, Proceedings of 8th International Parallel Processing Symposium.

Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3

Makoto Taiji, Siegfried Höfinger, Tetsu Narumi, 2011, Comput. J..

GRAPE: special purpose computer for simulations of many-body systems

Toshikazu Ebisuzaki, Tomoyoshi Ito, Makoto Taiji, 1993, [1993] Proceedings of the Twenty-sixth Hawaii International Conference on System Sciences.

HARP-1: a special-purpose computer for N-body simulation with the Hermite integrator

Makoto Taiji, Junichiro Makino, Eiichiro Kokubo, 1994, 1994 Proceedings of the Twenty-Seventh Hawaii International Conference on System Sciences.

42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence

Makoto Taiji, Rio Yokota, Tsuyoshi Hamada, 2009, Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis.

Scientific simulations with special purpose computers - the GRAPE systems

Makoto Taiji, Junichiro Makino, J. Makino, 1998 .

A novel multiple-walk parallel algorithm for the Barnes–Hut treecode on GPUs – towards cost effective, high performance N-body simulation

Tomonari Masada, Yuichiro Shibata, Kiyoshi Oguri, 2009, Computer Science - Research and Development.

Inaccessibility in on-line learning of recurrent neural networks

Makoto Taiji, Takashi Ikegami, Asaki Saito, 2000 .

GRAPE-4: A Special-Purpose Computer for Gravitational N-Body Problems

Toshikazu Ebisuzaki, Makoto Taiji, Junichiro Makino, 1995, PPSC.

1PT188 Improvement of sampling efficiency through combined use of molecular dynamics simulations with implicit and explicit solvent models(The 50th Annual Meeting of the Biophysical Society of Japan)

Makoto Taiji, Hiroko X. Kondo, Noriaki Okimoto, 2012 .

Dynamics of internal models in game players

Makoto Taiji, Takashi Ikegami, T. Ikegami, 1998, adap-org/9807004.

On the Power of Nonlinear Mappings in Switching Map Systems

Makoto Taiji, Takashi Ikegami, Yuzuru Sato, 2000, UMC.

Assessment and acceleration of binding energy calculations for protein–ligand complexes by the fragment molecular orbital method

Makoto Taiji, Takao Otsuka, Noriaki Okimoto, 2015, J. Comput. Chem..

Astrophysical N-body simulations on the GRAPE-4 Special-Purpose Computer

Makoto Taiji, Junichiro Makino, 1995, SC.

A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3

Toshikazu Ebisuzaki, Ryutaro Himeno, Makoto Taiji, 2007, Proceedings of the 2007 ACM/IEEE Conference on Supercomputing (SC '07).

2P297 Computer-Aided Peptide Design : Application to biomolecules(The 48th Annual Meeting of the Biophysical Society of Japan)

Makoto Taiji, Noriaki Okimoto, Junya Yamagishi, 2010 .

Design of a Hardware Board for Sequence Alignment

Tsuyoshi Kato, Makoto Taiji, Akira Suyama, 1995 .

Protein Explorer: A Petaflops Special-Purpose Computer for Molecular Dynamics Simulations

Akihiko Konagaya, Naoki Takada, Makoto Taiji, 2002 .

1P-051 Investigation of Domain Motions in Proteins by Molecular Dynamics Simulation(The 46th Annual Meeting of the Biophysical Society of Japan)

Makoto Taiji, Yousuke Ohno, Gentaro Morimoto, 2008 .

Protein Explorer: A Petaops Special-Purpose Computer for Molecular Dynamics Simulations

Makoto Taiji, Tetsu Narumi, Yousuke Ohno, 2002 .

Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations

Akihiko Konagaya, Makoto Taiji, Tetsu Narumi, 2003, SC.

Computational astrophysics on a special-purpose machine

Makoto Taiji, Junichiro Makino, J. Makino, 1996 .

Inaccessibility in online learning of recurrent neural networks.

Makoto Taiji, Takashi Ikegami, Asaki Saito, 2004, Physical review letters.

A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation

Makoto Taiji, Tsuyoshi Hamada, Khaled Benkrid, 2009, 2009 NASA/ESA Conference on Adaptive Hardware and Systems.

A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3

Ryutaro Himeno, Makoto Taiji, Tetsu Narumi, 2006, SC.

MDGRAPE-4: a special-purpose computer system for molecular dynamics simulations

Makoto Taiji, Yousuke Ohno, Aki Hasegawa, 2014, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

GRAPE 4: a one-Tflops special-purpose computer for astrophysical N-body problem

Toshikazu Ebisuzaki, Makoto Taiji, Junichiro Makino, 1994, Proceedings of Supercomputing '94.

Current performance gains from utilizing the GPU or the ASIC MDGRAPE‐3 within an enhanced Poisson Boltzmann approach

Makoto Taiji, Siegfried Höfinger, Tetsu Narumi, 2009, J. Comput. Chem..

Application of MDGRAPE‐3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems

Haruki Nakamura, Ryutaro Himeno, Makoto Taiji, 2009, J. Comput. Chem..

High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations

Makoto Taiji, Tetsu Narumi, Gentaro Morimoto, 2010 .

Petascale molecular dynamics simulation using the fast multipole method on K computer

Huda Ibeid, Makoto Taiji, Rio Yokota, 2014, Comput. Phys. Commun..

High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations

Makoto Taiji, Tetsu Narumi, Yousuke Ohno, 2009, PLoS Comput. Biol..

Imitation and Cooperation in Coupled Dynamical Recognizers

Makoto Taiji, Takashi Ikegami, T. Ikegami, 1999, ECAL.

A new set of atomic radii for accurate estimation of solvation free energy by Poisson–Boltzmann solvent model

Makoto Taiji, Gentaro Morimoto, Noriaki Okimoto, 2014, J. Comput. Chem..

Parallelized Simulation of Molecular Dynamics with a Special-Purpose Computer: MDGRAPE-2

Toshikazu Ebisuzaki, Makoto Taiji, Tetsu Narumi, 2003 .

Dynamical Singularities in Online Learning of Recurrent Neural Networks

Makoto Taiji, Takashi Ikegami, Asaki Saito, 2007, 2007 IEEE Symposium on Foundations of Computational Intelligence.

Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model

Makoto Taiji, Tetsu Narumi, Kenji Yasuoka, 2008, SIAM J. Sci. Comput..

GRAPE: Special Purpose Computer for Gravitational N-body Simulations

T. Ebisuzaki, Makoto Taiji, Toshiyuki Fukushige, 1993 .

Grape-4: A Teraflops Machine for N -Body Simulations

Toshikazu Ebisuzaki, Makoto Taiji, Junichiro Makino, 1996 .

MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations

Akihiko Konagaya, Makoto Taiji, Tetsu Narumi, 2003, PARCO.

Hardware acceleration of tensor-structured multilevel ewald summation method on MDGRAPE-4A, a special-purpose computer system for molecular dynamics simulations

Makoto Taiji, Yousuke Ohno, Gentaro Morimoto, 2021, SC.

FGF9 monomer/dimer equilibrium regulates extracellular matrix affinity and tissue diffusion

Makoto Taiji, Sachiko Iseki, Haruhiko Koseki, 2009, Nature Genetics.

Relaxation dynamics of photoexcitations in polydiacetylene films

Makoto Taiji, Masayuki Yoshizawa, Takayoshi Kobayashi, 1989 .

Computation with Switching Map Systems: Nonlinearity and Computational Complexity

Makoto Taiji, Takashi Ikegami, Yuzuru Sato, 2001 .

Fast and accurate molecular dynamics simulation of a protein using a special‐purpose computer

Makoto Taiji, Yuto Komeiji, Masami Uebayasi, 1997 .

Visualising and controlling the flow in biomolecular systems at and between multiple scales: from atoms to hydrodynamics at different locations in time and space.

Makoto Taiji, Dmitry Nerukh, Arturs Scukins, 2014, Faraday discussions.

Folding dynamics of 10-residue beta-hairpin peptide chignolin.

Makoto Taiji, Tetsu Narumi, Yousuke Ohno, 2007, Chemistry, an Asian journal.

Relaxation dynamics of photoexcitations in polydiacetylenes and polythiophene

Uwe Stamm, Makoto Taiji, Masayuki Yoshizawa, 1990 .

GRAPE-4: A Massively Parallel Special-Purpose Computer for Collisional N-Body Simulations

Toshikazu Ebisuzaki, Makoto Taiji, Junichiro Makino, 1997 .

A Highly Parallelized Special-Purpose Computer for Many-Body Simulations with an Arbitrary Central Force: MD-GRAPE

Toshikazu Ebisuzaki, Makoto Taiji, Toshiyuki Fukushige, 1996 .

Special purpose computer system for Ising models

Makoto Taiji, Nobuyasu Ito, Masuo Suzuki, 1988 .

Free-energy landscapes of protein domain movements upon ligand binding.

Makoto Taiji, Gentaro Morimoto, Hiroko X Kondo, 2011, The journal of physical chemistry. B.

Folding Dynamics of 10‐Residue β‐Hairpin Peptide Chignolin

Makoto Taiji, Noriaki Okimoto, Noriyuki Futatsugi, 2007 .

Novel Mechanism of Interaction of p85 Subunit of Phosphatidylinositol 3-Kinase and ErbB3 Receptor-derived Phosphotyrosyl Peptides*

Akihiko Konagaya, Makoto Taiji, Tetsu Narumi, 2005, Journal of Biological Chemistry.

Structure and dynamics of RNA polymerase II elongation complex.

Toshikazu Ebisuzaki, Akihiko Konagaya, Makoto Taiji, 2006, Biochemical and biophysical research communications.

Femtosecond nonlinear optical dynamics of excitons in J-aggregates

Makoto Taiji, Kaoru Minoshima, Kazuhiko Misawa, 1994 .

Accurate Estimation of the Dynamical Critical Exponent of the Two-Dimensional Kinetic Ising Model Based on the Ising Machine m-TIS

Makoto Taiji, Nobuyasu Ito, M. Suzuki, 1987 .

Ligand Diffusion on Protein Surface Observed in Molecular Dynamics Simulation.

Makoto Taiji, Dmitry Nerukh, Noriaki Okimoto, 2012, The journal of physical chemistry letters.

Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides.

Akihiko Konagaya, Makoto Taiji, Tetsu Narumi, 2003, Biochemistry.

Mutation of epidermal growth factor receptor is associated with MIG6 expression

Hiroshi Tanaka, Shih-Feng Tsai, Makoto Taiji, 2009, The FEBS journal.