Timothy Ravasi

发表

Unexpected complexity of the Reef-Building Coral Acropora millepora transcription factor network

Taewoo Ryu, Charalampos Mavromatis, Till Bayer, 2011, BMC Systems Biology.

Poster: Observing change in crowded data sets in 3D space - Visualizing gene expression in human tissues

Daniel Acevedo Feliz, Jürgen P. Schulze, Marcin Rogowski, 2013, 2013 IEEE Symposium on 3D User Interfaces (3DUI).

Nonlinear dimension reduction and clustering by Minimum Curvilinearity unfold neuropathic pain and tissue embryological classes

Trey Ideker, Franco Maria Montevecchi, Carlo Vittorio Cannistraci, 2010, Bioinform..

Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding

Carlo Vittorio Cannistraci, Timothy Ravasi, Gregorio Alanis-Lobato, 2013, Bioinform..

A promoter-level mammalian expression atlas

Cesare Furlanello, Finn Drabløs, Carsten O. Daub, 2015 .

From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks

Timothy Ravasi, Carlo Vittorio Cannistraci, Gregorio Alanis-Lobato, 2013, Scientific Reports.

Semi-automated quantification of living cells with internalized nanostructures

Jürgen Kosel, Christoph Sommer, Timothy Ravasi, 2016, Journal of Nanobiotechnology.

Systems biology of transcription control in macrophages

Timothy Ravasi, D. Hume, T. Ravasi, 2007, BioEssays : news and reviews in molecular, cellular and developmental biology.

Non-chemotoxic induction of cancer cell death using magnetic nanowires

Jürgen Kosel, Timothy Ravasi, R. Sougrat, 2015, International journal of nanomedicine.

Anti-cancer agents in Saudi Arabian herbals revealed by automated high-content imaging

Christian R. Voolstra, Timothy Ravasi, Abdul-Hamid Emwas, 2017, PloS one.

The sponge microbiome project

Fang Liu, Amnon Amir, Rob Knight, 2017, GigaScience.

Dynamic Epigenetic Control of Highly Conserved Noncoding Elements

Loqmane Seridi, Taewoo Ryu, Timothy Ravasi, 2014, PloS one.

Generation of Diversity in the Innate Immune System: Macrophage Heterogeneity Arises from Gene-Autonomous Transcriptional Probability of Individual Inducible Genes1

David A. Hume, Timothy Ravasi, Alan Aderem, 2002, The Journal of Immunology.

Exploitation of genetic interaction network topology for the prediction of epistatic behavior.

Timothy Ravasi, Carlo Vittorio Cannistraci, Gregorio Alanis-Lobato, 2013, Genomics.

miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria

Taewoo Ryu, Timothy Ravasi, Manuel Aranda, 2016, PloS one.

Highlighting nonlinear patterns in population genetics datasets

Anders Eriksson, Andrea Manica, Timothy Ravasi, 2015, Scientific Reports.

Study of monocyte membrane proteome perturbation during lipopolysaccharide‐induced tolerance using iTRAQ‐based quantitative proteomic approach

Xin Li, Yong Wang, Timothy Ravasi, 2010, Proteomics.

Systematic characterization of the zinc-finger-containing proteins in the mouse transcriptome.

Terry Gaasterland, Mihaela Zavolan, Thomas Huber, 2003, Genome research.

Identification and Predictive Value of Interleukin-6+ Interleukin-10+ and Interleukin-6− Interleukin-10+ Cytokine Patterns in ST-Elevation Acute Myocardial Infarction

John Pernow, Per Tornvall, Timothy Ravasi, 2012, Circulation research.

A systems approach to delineate functions of paralogous transcription factors: Role of the Yap family in the DNA damage response

Timothy Ravasi, Hoda Feizi, T. Ideker, 2008, Proceedings of the National Academy of Sciences.

Defining the protein interaction network of human malaria parasite Plasmodium falciparum.

Timothy Ravasi, Arnab Pain, T. Ravasi, 2012, Genomics.

Transcriptional network dynamics in macrophage activation.

Piero Carninci, Diego di Bernardo, Manuela Gariboldi, 2006, Genomics.

Phosphoregulators: protein kinases and protein phosphatases of mouse.

Thomas Huber, Timothy Ravasi, Alistair R R Forrest, 2003, Genome research.

The JNK Are Important for Development and Survival of Macrophages

David A. Hume, Timothy Ravasi, S. R. Himes, 2006, The Journal of Immunology.

Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering

Ziv Bar-Joseph, Trey Ideker, Timothy Ravasi, 2010, Genome Biology.

Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies

Tanja Kunej, Timothy Ravasi, Minja Zorc, 2013, BMC Medical Genomics.

Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics

David A. Hume, Timothy Ravasi, D. Hume, 2004 .

The evolution of ultraconserved elements with different phylogenetic origins

Loqmane Seridi, Taewoo Ryu, Timothy Ravasi, 2012, BMC Evolutionary Biology.

An Integrated Systems Analysis Implicates EGR1 Downregulation in Simian Immunodeficiency Virus Encephalitis-Induced Neural Dysfunction

Trey Ideker, Timothy Ravasi, Merril Gersten, 2009, The Journal of Neuroscience.

SECOM: A Novel Hash Seed and Community Detection Based-Approach for Genome-Scale Protein Domain Identification

Ka-Chun Wong, Xin Gao, Taewoo Ryu, 2012, PloS one.

Coevolution within a transcriptional network by compensatory trans and cis mutations.

Trey Ideker, Timothy Ravasi, Sourav Bandyopadhyay, 2010, Genome research.

Exploring the genetics underlying autoimmune diseases with network analysis and link prediction

Timothy Ravasi, Gregorio Alanis-Lobato, T. Ravasi, 2014, 2nd Middle East Conference on Biomedical Engineering.

The mononuclear phagocyte system revisited

Timothy Ravasi, S. R. Himes, T. Ravasi, 2002, Journal of leukocyte biology.

Antisense Transcription in the Mammalian Transcriptome RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium

Boris Lenhard, Martin C. Frith, Jun Kawai, 2005 .