J. Foster

发表

Best practices for evaluating single nucleotide variant calling methods for microbial genomics

Marc L. Salit, Paul Keim, Steven P. Lund, 2015, Front. Genet..

Comparison of Brucella abortus population structure based on genotyping methods with different levels of resolution.

J. Foster, V. Azevedo, J. Gillece, 2023, Journal of microbiological methods.

Emerging diversity and ongoing expansion of the genus Brucella.

J. Foster, A. Whatmore, J. Foster, 2021, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Evolutionary history and current distribution of the West Mediterranean lineage of Brucella melitensis in Italy

J. Foster, M. Ancora, J. Sahl, 2020, Microbial genomics.

Comparative Phylogenomics and Evolution of the Brucellae Reveal a Path to Virulence

B. Sobral, J. Foster, S. Beckstrom-Sternberg, 2013, Journal of bacteriology.

Investigating genetic diversity of Brucella abortus and Brucella melitensis in Italy with MLVA-16.

P. Calistri, J. Foster, M. Ancora, 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella

Paul Keim, Talima Pearson, Jeffrey T. Foster, 2009, Journal of bacteriology.

Within-Host Evolution of Burkholderia pseudomallei in Four Cases of Acute Melioidosis

Amy J. Vogler, J. Foster, A. Vogler, 2010, PLoS pathogens.

Complete Genome Sequences of Beijing and Manila Family Strains of Mycobacterium tuberculosis

J. Foster, S. Hou, K. Drees, 2014, Genome Announcements.

Staphylococcus aureus CC398: Host Adaptation and Emergence of Methicillin Resistance in Livestock

Maliha Aziz, Stefan Schwarz, Paul Keim, 2012, mBio.

Genetic structure and population history in two critically endangered Kaua‘i honeycreepers

J. Foster, R. Chesser, B. Masuda, 2021, Conservation Genetics.

Origins and global context of Brucella abortus in Italy

P. Calistri, J. Foster, M. Ancora, 2016, bioRxiv.

Persistence of Brucella abortus lineages revealed by genomic characterization and phylodynamic analysis

J. Foster, N. Thomson, J. Ladner, 2020, PLoS neglected tropical diseases.

Genomic epizoology of a Brucella abortus outbreak in Northern Ireland (1997-2012).

J. Foster, K. Jones, K. Drees, 2020, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Genome Sequences of 11 Brucella abortus Isolates from Persistently Infected Italian Regions

P. Calistri, M. Ancora, C. Cammà, 2015, Genome Announcements.

Phylogenetic understanding of clonal populations in an era of whole genome sequencing.

Paul Keim, Talima Pearson, J. Foster, 2009, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

MetaGeniE: Characterizing Human Clinical Samples Using Deep Metagenomic Sequencing

Paul Keim, Jeffrey T. Foster, David M. Engelthaler, 2014, PloS one.

Introduced Birds and the Fate of Hawaiian Rainforests

J. Foster, S. Robinson, J. Foster, 2007, Conservation biology : the journal of the Society for Conservation Biology.

Deconstructing the Bat Skin Microbiome: Influences of the Host and the Environment

Karen E. Powers, J. Foster, L. Parfrey, 2016, Front. Microbiol..

RESCRIPt: Reproducible sequence taxonomy reference database management

Benjamin D. Kaehler, Nicholas A. Bokulich, Michal Ziemski, 2020, bioRxiv.

Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes.

Charles H D Williamson, Leonard A. Smith, Henry S Gibbons, 2015, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer

Raymond K. Auerbach, R. Kaul, A. Hoffmaster, 2009, BMC Biology.

Efficacy of a probiotic bacterium to treat bats affected by the disease white-nose syndrome

J. Foster, A. M. Kilpatrick, W. F. Frick, 2017 .

Efﬁcacy of a probiotic bacterium to treat bats affected by the disease white-nose syndrome

J. Foster, A. M. Kilpatrick, W. F. Frick, 2017 .

THE INNATE IMMUNE RESPONSE MAY BE IMPORTANT FOR SURVIVING PLAGUE IN WILD GUNNISON'S PRAIRIE DOGS

J. Foster, S. Beckstrom-Sternberg, P. Keim, 2013, Journal of wildlife diseases.

Feral swine brucellosis in the United States and prospective genomic techniques for disease epidemiology.

P. Keim, J. Corn, B. Schmit, 2013, Veterinary microbiology.

Application of genetics and genomics to wildlife epidemiology

J. Foster, M. D. Samuel, S. Robinson, 2016 .

J. Foster, M. Gyuranecz, Z. Kreizinger, 2014, Veterinary microbiology.

Drivers of variation in species impacts for a multi-host fungal disease of bats

J. Foster, T. Kunz, A. M. Kilpatrick, 2016, Philosophical Transactions of the Royal Society B: Biological Sciences.

Spatial and temporal variation in New Hampshire bat diets

Devon R. O'Rourke, J. Foster, Katy L. Parise, 2022, Scientific Reports.

A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses

Nicholas A. Bokulich, Jeffrey T. Foster, Devon R. O'Rourke, 2020, Ecology and evolution.

Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia

Paul Keim, Talima Pearson, Amy J. Vogler, 2011, BMC Microbiology.

Whole-Genome Sequencing of Burkholderia pseudomallei Isolates from an Unusual Melioidosis Case Identifies a Polyclonal Infection with the Same Multilocus Sequence Type

J. Foster, P. Keim, T. Pearson, 2014, Journal of Clinical Microbiology.

Genomic investigation of antimicrobial resistance in Brucella abortus strains isolated from cattle in Brazil

J. Foster, D. Pickard, J. Gillece, 2023, Gene Reports.

First report and whole-genome sequencing of Pseudochrobactrum saccharolyticum in Latin America.

J. Foster, V. Azevedo, D. Pickard, 2022, Microbes and infection.

Development and Validation of Burkholderia pseudomallei-Specific Real-Time PCR Assays for Clinical, Environmental or Forensic Detection Applications

Direk Limmathurotsakul, Paul Keim, Talima Pearson, 2012, PloS one.

Genomic sequencing is required for identification of tuberculosis transmission in Hawaii

J. Foster, S. Hou, K. Drees, 2018, BMC Infectious Diseases.

Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection

Crystal M. Hepp, J. Foster, P. Keim, 2020, PLoS pathogens.

Pathogen to commensal: longitudinal within-host population dynamics, evolution, and adaptation during a chronic >16-year Burkholderia pseudomallei infection

J. Foster, P. Keim, C. Hepp, 2019, bioRxiv.

Genomics reveals historic and contemporary transmission dynamics of a bacterial disease among wildlife and livestock

Neil J. Anderson, Eric K. Cole, G. Luikart, 2016, Nature Communications.

Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis)

Agnes P Chan, Paul Keim, Jacques Ravel, 2010, BMC Plant Biology.

Lord of the Diptera (and Moths and a Spider): Molecular Diet Analyses and Foraging Ecology of Indiana Bats in Illinois

Nicholas A. Bokulich, Devon R. O'Rourke, J. Foster, 2021, Frontiers in Ecology and Evolution.

Ambiguities in using telomere length for age determination in two North American bat species

C. W. Kilpatrick, J. Foster, T. O'Shea, 2020, Journal of Mammalogy.

Nowhere to fly: Avian malaria is ubiquitous from ocean to summit on a Hawaiian island

J. Foster, A. M. Kilpatrick, Katy L. Parise, 2023, Biological Conservation.

St. Louis Encephalitis Virus in the Southwestern United States: A Phylogeographic Case for a Multi-Variant Introduction Event

Crystal M. Hepp, J. Foster, V. Fofanov, 2021, Frontiers in Genetics.

Energy conserving thermoregulatory patterns and lower disease severity in a bat resistant to the impacts of white-nose syndrome

J. Foster, D. Reeder, M. Furze, 2017, Journal of Comparative Physiology B.

Disease alters macroecological patterns of North American bats

S. Puechmaille, J. Foster, R. Reynolds, 2015 .

Host and pathogen ecology drive the seasonal dynamics of a fungal disease, white-nose syndrome

J. Foster, T. Kunz, A. M. Kilpatrick, 2015, Proceedings of the Royal Society B: Biological Sciences.

Extreme sensitivity to ultraviolet light in the fungal pathogen causing white-nose syndrome of bats

J. Foster, D. Lindner, K. Drees, 2018, Nature Communications.

Worldwide Phylogenetic Relationship of Avian Poxviruses

P. Parker, J. Foster, U. Höfle, 2013, Journal of Virology.

Sex-biased infections scale to population impacts for an emerging wildlife disease

J. Foster, A. M. Kilpatrick, Heather M. Kaarakka, 2023, bioRxiv.

Eastern Whip-poor-will abundance declines with urban land cover and increases with moth abundance in the American Midwest

J. Foster, T. J. Benson, M. Ward, 2022, Ornithological Applications.

Environmental reservoir dynamics predict global infection patterns and population impacts for the fungal disease white-nose syndrome

J. Foster, Y. Yovel, A. M. Kilpatrick, 2020, Proceedings of the National Academy of Sciences.

Interactions Between the Yeast Ogataea pini and Filamentous Fungi Associated with the Western Pine Beetle

J. Foster, P. Keim, T. Davis, 2011, Microbial Ecology.

Interactions between multiple fungi isolated from two bark beetles, Dendroctonus brevicomis and Dendroctonus frontalis (Coleoptera: Curculionidae).

J. Foster, P. Keim, K. Klepzig, 2010 .

Forensic analysis in bacterial pathogens

Amy J. Vogler, J. Foster, A. Vogler, 2020, Microbial Forensics.

Host persistence or extinction from emerging infectious disease: insights from white-nose syndrome in endemic and invading regions

Tinglei Jiang, Guanjun Lu, Keping Sun, 2016, Proceedings of the Royal Society B: Biological Sciences.

Host infection dynamics and disease induced mortality modify species contributions to the environmental reservoir

J. Foster, A. M. Kilpatrick, Heather M. Kaarakka, 2023, bioRxiv.

Experimental inoculation trial to determine the effects of temperature and humidity on White-nose Syndrome in hibernating bats

J. Foster, J. Boyles, W. F. Frick, 2022, Scientific Reports.

Field trial of a probiotic bacteria to protect bats from white-nose syndrome

J. Foster, A. M. Kilpatrick, Heather M. Kaarakka, 2019, Scientific Reports.

Pathogen dynamics during invasion and establishment of white-nose syndrome explain mechanisms of host persistence.

J. Foster, A. M. Kilpatrick, W. F. Frick, 2017, Ecology.

Resistance in persisting bat populations after white-nose syndrome invasion

J. Foster, A. M. Kilpatrick, W. F. Frick, 2017, Philosophical Transactions of the Royal Society B: Biological Sciences.

First Detection of Bat White-Nose Syndrome in Western North America

J. Foster, D. Lindner, J. Palmer, 2016, mSphere.

Widespread Bat White-Nose Syndrome Fungus, Northeastern China

J. Foster, A. M. Kilpatrick, Tinglei Jiang, 2016, Emerging infectious diseases.

Invasion Dynamics of White-Nose Syndrome Fungus, Midwestern United States, 2012–2014

J. Foster, A. M. Kilpatrick, W. F. Frick, 2015, Emerging infectious diseases.

Trace: Tennessee Research and Creative Exchange Efficacy of Visual Surveys for White-nose Syndrome at Bat Hibernacula Recommended Citation Efficacy of Visual Surveys for White-nose Syndrome at Bat Hibernacula

G. McCracken, D. Russo, W. F. Frick, 2022 .

Spotted bat (Euderma maculatum) microsatellite discovery using illumina sequencing

Carol L. Chambers, K. Drees, Faith M. Walker, 2014, Conservation Genetics Resources.

Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data

J. Foster, D. Rasko, R. Colman, 2015, Genome Medicine.

Pre-Columbian Origins for North American Anthrax

J. Foster, J. Ravel, A. Hoffmaster, 2009, PloS one.

Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis

J. Foster, J. Ravel, M. J. Rosovitz, 2011, PloS one.

Multidrug-Resistant Staphylococcus aureus in US Meat and Poultry

J. Foster, L. Price, D. Engelthaler, 2011, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Epidemiological Tracking and Population Assignment of the Non-Clonal Bacterium, Burkholderia pseudomallei

J. Foster, B. Spratt, D. Godoy, 2011, PLoS neglected tropical diseases.

A new species of African Forest Robin from Gabon (Passeriformes: Muscicapidae: Stiphrornis)

Brian K. Schmidt, J. Foster, R. Fleischer, 2008 .

Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia

Leonard A. Smith, J. Foster, B. Foley, 2016, BMC Genomics.

POPULATION ECOLOGY AND SOME POTENTIAL IMPACTS OF EMERGING POPULATIONS OF EXOTIC PARROTS

J. Foster, W. Pitt, Douglas E. Runde, 2007 .

No selection on immunological markers in response to a highly virulent pathogen in an Arctic breeding bird

J. Foster, Sophie Bourgeon, G. Burness, 2014, Evolutionary applications.

Survival, dispersal, and home-range establishment of reintroduced captive-bred puaiohi, Myadestes palmeri

Jeffrey T. Foster, Paul Oesterle, Bethany L. Woodworth, 2003 .

Nesting success of native and introduced forest birds on the island of Kaua'i

J. Foster, L. Crampton, Ruby L. Hammond, 2016 .

White-nose syndrome fungus, Pseudogymnoascus destructans, on bats captured emerging from caves during winter in the southeastern United States

Riley F. Bernard, J. Foster, G. McCracken, 2017 .

J. Foster, Matthew J. Johnson, T. Theimer, 2017, Biological Invasions.

Phylogenetics of a Fungal Invasion: Origins and Widespread Dispersal of White-Nose Syndrome

S. Puechmaille, J. Foster, P. Keim, 2017, mBio.

Genomics in Conservation: Case Studies and Bridging the Gap between Data and Application.

Paul Sunnucks, Gordon Luikart, Stephen J O'Brien, 2016, Trends in ecology & evolution.

Ricin forensics

J. Foster, R. Bull, Paul Keim, 2020, Microbial Forensics.

Ricin Forensics: Comparisons to Microbial Forensics

J. Foster, P. Keim, R. Bull, 2011 .

Reducing environmentally mediated transmission to moderate impacts of an emerging wildlife disease

J. Foster, A. M. Kilpatrick, Heather M. Kaarakka, 2022, bioRxiv.

African Lineage Brucella melitensis Isolates from Omani Livestock

J. Foster, A. Hoffmaster, P. Keim, 2018, Front. Microbiol..

Herd immunity drives the epidemic fadeout of avian cholera in Arctic-nesting seabirds

J. Foster, O. Love, S. Iverson, 2021, Scientific reports.

Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach

J. Foster, P. Keim, E. Merkley, 2015, PloS one.

Francisella guangzhouensis sp. nov., isolated from air-conditioning systems.

J. Foster, P. Kämpfer, H. Busse, 2013, International journal of systematic and evolutionary microbiology.

Convergent evolution of ‘creepers’ in the Hawaiian honeycreeper radiation

J. Foster, R. Fleischer, H. James, 2009, Biology Letters.

Ground-based rodent control in a remote Hawaiian rainforest on Maui

J. Foster, T. Malcolm, J. Groombridge, 2008 .

White-nose syndrome restructures bat skin microbiomes

J. Foster, M. MacManes, A. M. Kilpatrick, 2019, bioRxiv.

Trends in Bacterial Pathogens of Bats: Global Distribution and Knowledge Gaps

J. Foster, C. McKee, T. Szentiványi, 2023, Transboundary and Emerging Diseases.

Structure, spatial dynamics, and stability of novel seed dispersal mutualistic networks in Hawaiʻi

J. Foster, Jeferson Vizentin‐Bugoni, C. Tarwater, 2019, Science.