A. Pfenning

发表

Predicting lineage-specific differences in open chromatin across dozens of mammalian genomes 2 3

Andreas R. Pfenning, Irene M. Kaplow, Morgan E. Wirthlin, 2020 .

High-throughput functional comparison of promoter and enhancer activities

Andreas R. Pfenning, Martin Hemberg, Rory Kirchner, 2016, Genome research.

Integrative analysis of 111 reference human epigenomes

Michael Q. Zhang, Nicholas A. Sinnott-Armstrong, Michael T. McManus, 2015, Nature.

Leveraging Base Pair Mammalian Constraint to Understand Genetic Variation and Human Disease

Voichita D. Marinescu, Andreas R. Pfenning, Graham M. Hughes, 2023, bioRxiv.

Comparative genomics reveals insights into avian genome evolution and adaptation

Andreas R. Pfenning, Michael N Romanov, T. Warnow, 2014, Science.

Cell type-specific histone acetylation profiling of Alzheimer’s disease subjects and integration with genetics

Andreas R. Pfenning, L. Tsai, D. Bennett, 2020, bioRxiv.

Genome-Wide Identification of Calcium-Response Factor (CaRF) Binding Sites Predicts a Role in Regulation of Neuronal Signaling Pathways

Andreas R. Pfenning, J. M. Spotts, M. Hemberg, 2010, PloS one.

Transcriptional Alterations in Dorsolateral Prefrontal Cortex and Nucleus Accumbens Implicate Neuroinflammation and Synaptic Remodeling in Opioid Use Disorder

Andreas R. Pfenning, BaDoi N. Phan, Z. Freyberg, 2021, Biological Psychiatry.

Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration

Andreas R. Pfenning, Matheus B. Victor, L. Tsai, 2021, bioRxiv.

Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in the aging and Alzheimer human brain

Hans-Ulrich Klein, Bradley E. Bernstein, Andreas R. Pfenning, 2018, Nature Neuroscience.

Epigenome-wide study uncovers tau pathology-driven changes of chromatin organization in the aging human brain

Andreas R. Pfenning, J. Schneider, L. Tsai, 2018, bioRxiv.

Relating enhancer genetic variation across mammals to complex phenotypes using machine learning

Andreas R. Pfenning, BaDoi N. Phan, Irene M. Kaplow, 2023, Science.

Relating enhancer genetic variation across mammals to complex phenotypes using machine learning

Andreas R. Pfenning, BaDoi N. Phan, Irene M. Kaplow, 2022, bioRxiv.

A comparative genomics multitool for scientific discovery and conservation

Voichita D. Marinescu, Andreas R. Pfenning, William J. Nash, 2020, Nature.

Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

Andreas R. Pfenning, Graham M. Hughes, K. Lindblad-Toh, 2020, Proceedings of the National Academy of Sciences.

Cell Type-Specific Oxidative Stress Genomic Signatures in the Globus Pallidus of Dopamine-Depleted Mice

Andreas R. Pfenning, A. Gittis, Alyssa J. Lawler, 2020, The Journal of Neuroscience.

Machine learning sequence prioritization for cell type-specific enhancer design.

Andreas R. Pfenning, BaDoi N. Phan, Irene M. Kaplow, 2022, eLife.

Machine learning sequence prioritization for cell type-specific enhancer design

Andreas R. Pfenning, Irene M. Kaplow, Morgan E. Wirthlin, 2021, bioRxiv.

Loss of epigenetic information as a cause of mammalian aging

Andreas R. Pfenning, Brendan L. O’Connell, Margarita V. Meer, 2023, Cell.

Erosion of the Epigenetic Landscape and Loss of Cellular Identity as a Cause of Aging in Mammals

Andreas R. Pfenning, Brendan L. O’Connell, Margarita V. Meer, 2019, bioRxiv.

Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes

Andreas R. Pfenning, Manolis Kellis, L. Tsai, 2015, Cell.

Core and region-enriched networks of behaviorally regulated genes and the singing genome

Andreas R. Pfenning, Manolis Kellis, Sayan Mukherjee, 2014, Science.

Transcriptional alterations in opioid use disorder reveal an interplay between neuroinflammation and synaptic remodeling

Andreas R. Pfenning, BaDoi N. Phan, G. Tseng, 2020, bioRxiv.

Global view of the functional molecular organization of the avian cerebrum: Mirror images and functional columns

Andreas R. Pfenning, E. Jarvis, M. Rivas, 2013, The Journal of comparative neurology.

Molecular profiling of the developing avian telencephalon: Regional timing and brain subdivision continuities

Andreas R. Pfenning, E. Jarvis, Chun‐Chun Chen, 2013, The Journal of comparative neurology.

The genome of a songbird

Albert J. Vilella, Andreas R. Pfenning, Miriam K. Konkel, 2010, Nature.

Molecular rhythm alterations in prefrontal cortex and nucleus accumbens associated with opioid use disorder

Andreas R. Pfenning, BaDoi N. Phan, J. Glausier, 2021, bioRxiv.

Regression convolutional neural network models implicate peripheral immune regulatory variants in the predisposition to Alzheimer’s disease

Andreas R. Pfenning, BaDoi N. Phan, Irene M. Kaplow, 2022, bioRxiv.

Cellular and Molecular Organization of the Rhesus Macaque Dorsal Horn with Comparison to Mouse

Andreas R. Pfenning, Ariel J. Levine, R. Dum, 2022 .