Takeyuki Tamura

发表

Finding and Analyzing the Minimum Set of Driver Nodes in control of Boolean Networks

Tatsuya Akutsu, Takeyuki Tamura, Wai-Ki Ching, 2016, Adv. Complex Syst..

Theoretical estimation of metabolic network robustness against multiple reaction knockouts using branching process approximation

Tatsuya Akutsu, Takeyuki Tamura, Kazuhiro Takemoto, 2013, 1307.4922.

Analysis and prediction of nutritional requirements using structural properties of metabolic networks and support vector machines.

T. Akutsu, O. Ebenhöh, Nils Christian, 2010, Genome informatics. International Conference on Genome Informatics.

A Fixed-Parameter Algorithm for Detecting a Singleton Attractor in an AND/OR Boolean Network with Bounded Treewidth

Tatsuya Akutsu, Takeyuki Tamura, Kun-Mao Chao, 2015, IEICE Trans. Fundam. Electron. Commun. Comput. Sci..

Limited uptake of essential amino acid is effective for cancer therapy in metabolic networks of integrated constraint-based models

T. Tamura, Takeyuki Tamura, 2018, bioRxiv.

Grid-based computational methods for the design of constraint-based parsimonious chemical reaction networks to simulate metabolite production: GridProd

Takeyuki Tamura, T. Tamura, Takeyuki Tamura, 2017, BMC Bioinformatics.

L1 Norm Minimal Mode-Based Methods for Listing Reaction Network Designs for Metabolite Production

Takeyuki Tamura, T. Tamura, Takeyuki Tamura, 2021, IEICE Trans. Inf. Syst..

Algorithms for Singleton Attractor Detection in Planar and Nonplanar AND/OR Boolean Networks

Tatsuya Akutsu, Takeyuki Tamura, T. Akutsu, 2009, Math. Comput. Sci..

On the parameterized complexity of associative and commutative unification

Atsuhiro Takasu, Tatsuya Akutsu, Takeyuki Tamura, 2013, Theor. Comput. Sci..

Computing Smallest Intervention Strategies for Multiple Metabolic Networks in a Boolean Model

Jiangning Song, Tatsuya Akutsu, Takeyuki Tamura, 2015, J. Comput. Biol..

Discrimination of singleton and periodic attractors in Boolean networks

Tatsuya Akutsu, Takeyuki Tamura, Wai-Ki Ching, 2017, Autom..

Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features

Jiangning Song, Tatsuya Akutsu, Takeyuki Tamura, 2018, Briefings Bioinform..

Colony-live —a high-throughput method for measuring microbial colony growth kinetics— reveals diverse growth effects of gene knockouts in Escherichia coli

H. Mori, B. Wanner, Rikiya Takeuchi, 2014, BMC Microbiology.

Computing Minimum Reaction Modifications in a Boolean Metabolic Network

Jiangning Song, Tatsuya Akutsu, Takeyuki Tamura, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Flux balance impact degree: a new definition of impact degree to properly treat reversible reactions in metabolic networks

Tatsuya Akutsu, Takeyuki Tamura, Yang Zhao, 2013, Bioinform..

Gene Deletion Algorithms for Minimum Reaction Network Design by Mixed-Integer Linear Programming for Metabolite Production in Constraint-Based Models: gDel_minRN

Takeyuki Tamura, Yukako Tohsato, Ai Muto-Fujita, 2021, J. Comput. Biol..

E�cient reaction deletion algorithms for redesign of constraint-based metabolic networks for metabolite production with weak coupling

Takeyuki Tamura, 2022 .

A-008 On Observability of Steady States in a Boolean Network

Tatsuya Akutsu, Takeyuki Tamura, T. Akutsu, 2014 .

Graph Algorithmic Approaches for Structure Inferences in Bioinformatics

T. Tamura, Takeyuki Tamura, 2006 .

MetNetComp: Database for Minimal and Maximal Gene-Deletion Strategies for Growth-Coupled Production of Genome-Scale Metabolic Networks

Takeyuki Tamura, 2023, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Title Network completion using dynamic programming and least-squares fitting

T. Akutsu, Yoshihiro Yamanishi, K. Horimoto, 2019 .

Circulating Exosomal miRNA Profiles Predict the Occurrence and Recurrence of Hepatocellular Carcinoma in Patients with Direct-Acting Antiviral-Induced Sustained Viral Response

T. Akutsu, T. Ochiya, A. Tamori, 2019, Biomedicines.

On control of singleton attractors in multiple Boolean networks: integer programming-based method

T. Akutsu, W. Ching, Yushan Qiu, 2014, BMC Systems Biology.

Integer Programming-Based Approach to Attractor Detection and Control of Boolean Networks

Tatsuya Akutsu, Takeyuki Tamura, Yang Zhao, 2012, IEICE Trans. Inf. Syst..

Integer programming-based methods for attractor detection and control of boolean networks

Tatsuya Akutsu, Takeyuki Tamura, Morihiro Hayashida, 2009, Proceedings of the 48h IEEE Conference on Decision and Control (CDC) held jointly with 2009 28th Chinese Control Conference.

Measuring Structural Robustness of Metabolic Networks under a Boolean Model Using Integer Programming and Feedback Vertex Sets

Tatsuya Akutsu, Takeyuki Tamura, Kazuhiro Takemoto, 2009, 2009 International Conference on Complex, Intelligent and Software Intensive Systems.

Finding Influential Genes Using Gene Expression Data and Boolean Models of Metabolic Networks

Tatsuya Akutsu, Takeyuki Tamura, Chun-Yu Lin, 2016, 2016 IEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE).

Exact algorithms for computing the tree edit distance between unordered trees

Atsuhiro Takasu, Tatsuya Akutsu, Takeyuki Tamura, 2010, Theor. Comput. Sci..

Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition

Tatsuya Akutsu, Takeyuki Tamura, T. Akutsu, 2007, BMC Bioinformatics.