Rui Alves

发表

Multi-level Optimization Framework Applied to the Systematic Evaluation of Metabolic Objective Functions

G. Guillén‐Gosálbez, A. Sorribas, P. Vaskan, 2014 .

Mathematical formalisms based on approximated kinetic representations for modeling genetic and metabolic pathways

A. Sorribas, B. Hernández-Bermejo, E. Vilaprinyó, 2008, Biotechnology & genetic engineering reviews.

Distributed under Creative Commons Cc-by 4.0 a Survey of Hk, Hpt, and Rr Domains and Their Organization in Two-component Systems and Phosphorelay Proteins of Organisms with Fully Sequenced Genomes

A. Sorribas, Baldiri Salvadó, E. Vilaprinyó, 2022 .

Integrating Bioinformatics and Computational Biology: Perspectives and Possibilities for In Silico Network Reconstruction in Molecular Systems Biology

Rui Alves, Albert Sorribas, Ester Vilaprinyo, 2008 .

Semi-Automated Reconstruction of Biological Circuits

R. Alves, Rui Alves, 2008 .

Evolution based on domain combinations: the case of glutaredoxins

Enrique Herrero, Albert Sorribas, Ester Vilaprinyo, 2009, BMC Evolutionary Biology.

Saccharomyces cerevisiae as a Model Organism: A Comparative Study

Albert Sorribas, Ester Vilaprinyo, Rui Alves, 2011, PloS one.

Identification of line-specific strategies for improving carotenoid production in synthetic maize through data-driven mathematical modeling.

A. Sorribas, P. Christou, G. Farré, 2016, The Plant journal : for cell and molecular biology.

An in vitro system for the rapid functional characterization of genes involved in carotenoid biosynthesis and accumulation.

A. Sorribas, P. Christou, Changfu Zhu, 2014, The Plant journal : for cell and molecular biology.

Multilevel interactions between native and ectopic isoprenoid pathways affect global metabolism in rice

P. Christou, G. Farré, Changfu Zhu, 2022, Transgenic Research.

Evolution of enzymes in metabolism: a network perspective.

Michael J E Sternberg, Raphael A G Chaleil, Raphael A. G. Chaleil, 2002, Journal of molecular biology.

Effect of overall feedback inhibition in unbranched biosynthetic pathways.

M A Savageau, M. Savageau, R. Alves, 2000, Biophysical journal.

Evolution of an Iron-Detoxifying Protein: Eukaryotic and Rickettsia Frataxins Contain a Conserved Site Which Is Not Present in Their Bacterial Homologues

R. Alves, J. Tamarit, F. Delaspre, 2022, International journal of molecular sciences.

Comparative analysis of prototype two‐component systems with either bifunctional or monofunctional sensors: differences in molecular structure and physiological function

Rui Alves, M. Savageau, R. Alves, 2003, Molecular microbiology.

Quantitative Operating Principles of Yeast Metabolism during Adaptation to Heat Stress.

A. Sorribas, G. Bellí, Baldiri Salvadó, 2018, Cell Reports.

Metabolic constraints and quantitative design principles in gene expression during adaption of yeast to heat shock

A. Sorribas, G. Bellí, Baldiri Salvadó, 2017, bioRxiv.

Maximization of information transmission influences selection of native phosphorelay architectures

R. Milo, A. Sorribas, Baldiri Salvadó, 2021, PeerJ.

What influences selection of native phosphorelay architectures?

Rui Alves, Albert Sorribas, Baldiri Salvado, 2020, bioRxiv.

Changing biosynthesis of terpenoid percursors in rice through synthetic biology

A. Sorribas, P. Christou, T. Capell, 2023, Frontiers in Plant Science.

Relative Amino Acid Composition Signatures of Organisms and Environments

M. Savageau, R. Alves, A. Moura, 2013, PloS one.

Evidence of selection for low cognate amino acid bias in amino acid biosynthetic enzymes

Michael A Savageau, Rui Alves, M. Savageau, 2005, Molecular microbiology.

Regulation of the Na+/K+-ATPase Ena1 Expression by Calcineurin/Crz1 under High pH Stress: A Quantitative Study

L. Yenush, J. Ariño, E. Vilaprinyó, 2016, PloS one.

Methods for and results from the study of design principles in molecular systems.

S. Omholt, A. Sorribas, Baldiri Salvadó, 2011, Mathematical biosciences.

Hysteretic and graded responses in bacterial two‐component signal transduction

Michael A Savageau, Oleg A Igoshin, Rui Alves, 2008, Molecular microbiology.

Evolution based on domain combinations: the case of glutaredoxins

A. Sorribas, E. Herrero, Rui Alves, 2009, BMC Evolutionary Biology.

Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models

Gonzalo Guillén-Gosálbez, Rui Alves, Albert Sorribas, 2011, BMC Systems Biology.

Optimization and evolution in metabolic pathways: global optimization techniques in Generalized Mass Action models.

Gonzalo Guillén-Gosálbez, Rui Alves, Albert Sorribas, 2010, Journal of biotechnology.

Use of physiological constraints to identify quantitative design principles for gene expression in yeast adaptation to heat shock

A. Sorribas, Rui Alves, Ester Vilaprinyó, 2006, BMC Bioinformatics.

Methods for and results from the study of design principles in molecular systems.

Albert Sorribas, Baldiri Salvado, Ester Vilaprinyo, 2011, Mathematical Biosciences.

Two Component Systems: Physiological Effect of a Third Component

Albert Sorribas, Baldiri Salvado, Ester Vilaprinyo, 2012, PloS one.

Special issue on biological design principles.

Albert Sorribas, Rui Alves, A. Sorribas, 2011, Mathematical biosciences.

Minimization of Biosynthetic Costs in Adaptive Gene Expression Responses of Yeast to Environmental Changes

Rui Alves, Ester Vilaprinyó, Albert Sorribas, 2010, PLoS Comput. Biol..

Extending the method of mathematically controlled comparison to include numerical comparisons

Rui Alves, Michael A. Savageau, M. Savageau, 2000, Bioinform..

Systemic properties of ensembles of metabolic networks: application of graphical and statistical methods to simple unbranched pathways

Rui Alves, Michael A. Savageau, M. Savageau, 2000, Bioinform..