Jarone Pinhassi

发表

Multiyear analysis uncovers coordinated seasonality in stocks and composition of the planktonic food web in the Baltic Sea proper

H. Farnelid, E. Lindehoff, C. Legrand, 2023, Scientific reports.

Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community

Thilo Gross, J. Pinhassi, C. Bunse, 2022, bioRxiv.

Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition

Anders F. Andersson, J. Venter, S. Yooseph, 2014, PloS one.

Ecology of marine Bacteroidetes: a comparative genomics approach

C. Pedrós-Alió, S. Acinas, M. Richter, 2013, The ISME Journal.

Winogradskyella rapida sp. nov., isolated from protein-enriched seawater.

M. Vancanneyt, J. Pinhassi, O. Nedashkovskaya, 2009, International journal of systematic and evolutionary microbiology.

Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria)

I. Paulsen, C. Pedrós-Alió, J. del Campo, 2008, Proceedings of the National Academy of Sciences.

Bacterial assemblage structure and carbon metabolism along a productivity gradient in the NE Atlantic Ocean

J. Gasol, D. Vaqué, J. Arístegui, 2007 .

Light stimulates growth of proteorhodopsin-containing marine Flavobacteria

R. Neutze, C. Pedrós-Alió, P. Gourdon, 2007, Nature.

Leeuwenhoekiella blandensis sp. nov., a genome-sequenced marine member of the family Flavobacteriaceae.

C. Pedrós-Alió, J. Bowman, J. Pinhassi, 2006, International journal of systematic and evolutionary microbiology.

An introduction to the biogeography of aquatic microbes

L. Katz, C. Lowe, G. McManus, 2005 .

Changes in Bacterioplankton Composition under Different Phytoplankton Regimens

Francesc Peters, J. Pinhassi, M. Sala, 2004, Applied and Environmental Microbiology.

Dominant marine bacterioplankton species found among colony-forming bacteria

J. Pinhassi, Å. Hagström, U. Zweifel, 1997, Applied and environmental microbiology.

Oxygenation of Hypoxic Coastal Baltic Sea Sediments Impacts on Chemistry, Microbial Community Composition, and Metabolism

M. Dopson, J. Pinhassi, Elias Broman, 2017, Front. Microbiol..

Dissemination of Multidrug-Resistant Bacteria into the Arctic

B. Olsen, J. Pinhassi, G. Kahlmeter, 2008, Emerging infectious diseases.

Dissemination of Multidrug- Resistant Bacteria

B. Olsen, J. Pinhassi, G. Kahlmeter, 2008 .

Repeated evolutionary transitions of flavobacteria from marine to non‐marine habitats

Haiwei Luo, Y. Huang, J. Pinhassi, 2019, Environmental microbiology.

Sensitivity of Bacterioplankton to Environmental Disturbance: A Review of Baltic Sea Field Studies and Experiments

J. Pinhassi, M. Lindh, Markus V. Lindh, 2018, Front. Mar. Sci..

Marine Bacterioplankton Seasonal Succession Dynamics.

J. Pinhassi, C. Bunse, Carina Bunse, 2017, Trends in microbiology.

Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers

Anders F. Andersson, M. Casini, A. Andersson, 2017, Environmental microbiology.

Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic

T. Reinthaler, F. Baltar, D. Lundin, 2016, Front. Microbiol..

Bimodal occupancy-frequency distributions uncover the importance of regional dynamics in shaping marine microbial biogeography

Anders F. Andersson, M. Casini, C. Legrand, 2016, bioRxiv.

Response of rare, common and abundant bacterioplankton to anthropogenic perturbations in a Mediterranean coastal site.

E. Calvo, C. Pelejero, G. Salazar, 2015, FEMS microbiology ecology.

The phylogenetic and ecological context of cultured and whole genome-sequenced planktonic bacteria from the coastal NW Mediterranean Sea.

E. Casamayor, C. Pedrós-Alió, S. Acinas, 2014, Systematic and applied microbiology.

Biogeographic analysis of ribosomal RNA clusters from marine bacterioplankton

J. Pinhassi, T. Pommier, Å. Hagström, 2005 .

High abundance of virulence gene homologues in marine bacteria

L. Riemann, S. Normark, J. Pinhassi, 2009, Environmental microbiology.

Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae

Jeremy G. Wideman, Thijs J. G. Ettema, P. Keeling, 2021, Nature Communications.

Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH.

C. Pedrós-Alió, J. Pernthaler, J. Gasol, 2007, FEMS microbiology ecology.

Ecophysiological analysis reveals distinct environmental preferences in closely related Baltic Sea picocyanobacteria.

H. Farnelid, C. Legrand, D. Lundin, 2023, Environmental microbiology.

Expression Levels of hgcAB Genes and Mercury Availability Jointly Explain Methylmercury Formation in Stratified Brackish Waters

S. Bertilsson, J. Pinhassi, E. Capo, 2022, Environmental science & technology.

Abundance and expression of hgcAB genes and mercury availability jointly explain methylmercury formation in stratified brackish waters

S. Bertilsson, J. Pinhassi, E. Capo, 2022, bioRxiv.

Oxygen‐deficient water zones in the Baltic Sea promote uncharacterized Hg methylating microorganisms in underlying sediments

S. Bertilsson, P. Hall, D. Lundin, 2021, Limnology and Oceanography.

Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism

M. Dopson, J. Pinhassi, Elias Broman, 2017, Microbiome.

Metagenome-assembled genomes uncover a global brackish microbiome

Anders F. Andersson, A. Andersson, J. Alneberg, 2015, bioRxiv.

Genomes from uncultivated prokaryotes : a 1 comparison of metagenome-assembled and 2 single-amplified genomes 3 4

Anders F. Andersson, S. Bertilsson, A. Andersson, 2017 .

Regulation of proteorhodopsin gene expression by nutrient limitation in the marine bacterium Vibrio sp. AND4.

Haiwei Luo, D. Milton, J. Pinhassi, 2013, Environmental microbiology.

Proteorhodopsin Phototrophy Promotes Survival of Marine Bacteria during Starvation

R. Neutze, D. Milton, J. Pinhassi, 2010, PLoS biology.

Warmer temperatures favor slower-growing bacteria in natural marine communities

Clare I. Abreu, J. Pinhassi, C. Bunse, 2022, bioRxiv.

Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system

Benjamin Pontiller, Sandra Martínez-García, D. Lundin, 2022, The ISME Journal.

Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord

Benjamin Pontiller, D. Lundin, J. Pinhassi, 2021, bioRxiv.

DNA phosphorothioation is widespread and quantized in bacterial genomes

Z. Deng, S. Giovannoni, E. Alm, 2011, Proceedings of the National Academy of Sciences.

Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology

E. Delong, C. Pedrós-Alió, O. Béjà, 2016, Microbiology and Molecular Reviews.

Ecology of marine Bacteroidetes: a comparative genomics approach

C. Pedrós-Alió, S. Acinas, B. Fernandez-Gomez, 2013, The ISME Journal.

Biogeographical diversity among marine bacterioplankton

J. Pinhassi, Å. Hagström, U. Zweifel, 2000 .

Estimation of bacterial use of dissolved organic nitrogen compounds in aquatic ecosystems using Biolog plates

J. Gasol, J. Pinhassi, M. Sala, 2006 .

Eutrophication and acidification: Do they induce changes in the dissolved organic matter dynamics in the coastal Mediterranean Sea?

E. Calvo, C. Pelejero, C. Marrasè, 2016, The Science of the total environment.

A consensus protocol for the recovery of mercury methylation genes from metagenomes

Daniel S. Jones, C. Gilmour, K. McMahon, 2022, bioRxiv.

Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities

F. Baltar, C. Legrand, D. Lundin, 2015, Front. Microbiol..

Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341

K. Holmfeldt, D. Lundin, J. Pinhassi, 2019, Applied and Environmental Microbiology.

Microbial Plankton Community Structure and Function Responses to Vitamin B12 and B1 Amendments in an Upwelling System

Benjamin Pontiller, Sandra Martínez-García, D. Lundin, 2021, Applied and environmental microbiology.

Labile Dissolved Organic Matter Compound Characteristics Select for Divergence in Marine Bacterial Activity and Transcription

Benjamin Pontiller, Sandra Martínez-García, D. Lundin, 2020, Frontiers in Microbiology.

Factors Controlling the Year-Round Variability in Carbon Flux Through Bacteria in a Coastal Marine System

J. Gasol, R. Massana, F. Unrein, 2008, Ecosystems.

Grazing rates and functional diversity of uncultured heterotrophic flagellates

F. Not, R. Massana, F. Unrein, 2009, The ISME Journal.

Effects of Bacteriophages on the Population Dynamics of Four Strains of Pelagic Marine Bacteria

M. G. Lorenz, M. Middelboe, N. Blackburn, 2001, Microbial Ecology.

Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability

Anders F. Andersson, L. Riemann, A. Andersson, 2018, Proceedings of the National Academy of Sciences.

Title : Role of Different Carbon Sources for Growth , Production and Community Composition of Bacterio-plankton

J. Pinhassi, Å. Hagström, M. Lindh, 2008 .

Towards a better understanding of microbial carbon flux in the sea

H. Ducklow, T. Reinthaler, J. Gasol, 2008 .

An annual cycle of dimethylsulfoniopropionate-sulfur and leucine assimilating bacterioplankton in the coastal NW Mediterranean.

J. Pernthaler, C. Alonso, J. Pinhassi, 2007, Environmental microbiology.

Use of Microautoradiography Combined with Fluorescence In Situ Hybridization To Determine Dimethylsulfoniopropionate Incorporation by Marine Bacterioplankton Taxa

M. Moran, C. Pedrós-Alió, J. Pinhassi, 2004, Applied and Environmental Microbiology.

Functional responses of key marine bacteria to environmental change – toward genetic counselling for coastal waters

Anders F. Andersson, C. Quince, L. Riemann, 2022, Frontiers in Microbiology.

Divergent gene expression responses in two Baltic Sea heterotrophic model bacteria to dinoflagellate dissolved organic matter

M. Moran, D. Lundin, J. Pinhassi, 2020, bioRxiv.

Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters

D. Lundin, J. Pinhassi, Elena Cerro-Gálvez, 2019, Environmental microbiology.

Structuring of bacterioplankton communities by specific dissolved organic carbon compounds.

J. Gasol, J. Pinhassi, L. Gómez-Consarnau, 2012, Environmental microbiology.

Adaptations of Microorganisms to Low Nutrient Environments: Managing Life in the Oligotrophic Ocean

Sandra Martínez-García, J. Pinhassi, S. Martínez-García, 2019, Reference Module in Life Sciences.

Gene segment reassortment between American and Asian lineages of avian influenza virus from waterfowl in the Beringia area.

A. Osterhaus, R. Fouchier, Å. Lundkvist, 2008, Vector borne and zoonotic diseases.

Neptuniibacter caesariensis gen. nov., sp. nov., a novel marine genome-sequenced gammaproteobacterium.

C. Pedrós-Alió, J. Pinhassi, J. Pascual, 2007, International journal of systematic and evolutionary microbiology.

COUPLING BETWEEN BACTERIOPLANKTON SPECIES COMPOSITION, POPULATION DYNAMICS, AND ORGANIC MATTER DEGRADATION

F. Azam, J. Pinhassi, Å. Hagström, 1999 .

Seawater mesocosm experiments in the Arctic uncover differential transfer of marine bacteria to aerosols.

E. Mårtensson, D. Nilsson, J. Pinhassi, 2015, Environmental microbiology reports.

Aerosol and bacterial emissions from Baltic Seawater

E. Mårtensson, J. Pinhassi, Å. Hagström, 2011 .

Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp. Strain MED134

A. Goesmann, S. Jaenicke, C. Pedrós-Alió, 2011, Applied and Environmental Microbiology.

Marine bacterioplankton show bursts of rapid growth induced by substrate shifts

J. Pinhassi, Å. Hagström, U. Zweifel, 2001 .

Diel variations in bacterial heterotrophic activity and growth in the northwestern Mediterranean Sea

C. Pedrós-Alió, J. Gasol, D. Vaqué, 1998 .

Dimethylsulfoniopropionate Turnover Is Linked to the Composition and Dynamics of the Bacterioplankton Assemblage during a Microcosm Phytoplankton Bloom

M. Moran, C. Pedrós-Alió, J. Pinhassi, 2005, Applied and Environmental Microbiology.

Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities

S. Bertilsson, M. Dopson, Marcelo Ketzer, 2022, Communications Biology.

Terrestrial dissolved organic matter inflow drives temporal dynamics of the bacterial community of a subarctic estuary (northern Baltic Sea).

J. Pinhassi, E. Capo, J. Paczkowska, 2021, Environmental microbiology.

Differential Growth Response of Colony-Forming α- and γ-Proteobacteria in Dilution Culture and Nutrient Addition Experiments from Lake Kinneret (Israel), the Eastern Mediterranean Sea, and the Gulf of Eilat

T. Berman, J. Pinhassi, Jarone Pinhassi, 2003, Applied and Environmental Microbiology.

Viral control of bacterial biodiversity--evidence from a nutrient-enriched marine mesocosm experiment.

M. Weinbauer, R. Sandaa, L. Riemann, 2009, Environmental microbiology.

Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes

Anders F. Andersson, C. Quince, L. Riemann, 2020, Communications Biology.

BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea

Anders F. Andersson, L. Riemann, A. Andersson, 2018, Scientific Data.

Dynamics of Metabolic Activities and Gene Expression in the Roseobacter Clade Bacterium Phaeobacter sp. Strain MED193 during Growth with Thiosulfate

F. Baltar, Saraladevi Muthusamy, José M. González, 2014, Applied and Environmental Microbiology.

Seasonal changes in bacterioplankton nutrient limitation and their effects on bacterial community composition in the NW Mediterranean Sea

C. Pedrós-Alió, J. Gasol, J. Pinhassi, 2006 .

Microbial Biotreatment of Actual Textile Wastewater in a Continuous Sequential Rice Husk Biofilter and the Microbial Community Involved

J. Pinhassi, J. Forss, U. Welander, 2017, PloS one.

Viral-Mediated Microbe Mortality Modulated by Ocean Acidification and Eutrophication: Consequences for the Carbon Fluxes Through the Microbial Food Web

E. Calvo, C. Pelejero, J. Gasol, 2021, Frontiers in Microbiology.

Cell-free extracellular enzymatic activity is linked to seasonal temperature changes: a case study in the Baltic Sea

F. Baltar, C. Legrand, J. Pinhassi, 2016 .

Cell-free extracellular enzymatic activity is linked to seasonal temperature changes in the Baltic Sea

F. Baltar, C. Legrand, J. Pinhassi, 2016 .

Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms.

J. Pernthaler, J. Gasol, K. Šimek, 2007, Environmental microbiology.

Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities

M. Dopson, J. Pinhassi, Elias Broman, 2023, The ISME journal.

Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom

A. Godhe, A. Kremp, N. Lundholm, 2016, Front. Microbiol..

Composition and Seasonality of Membrane Transporters in Marine Picoplankton

B. Müller-Karulis, J. Pinhassi, C. Bunse, 2021, Frontiers in Microbiology.

Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL341

D. Lundin, J. Pinhassi, Elena Cerro-Gálvez, 2019, Microbial biotechnology.

High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities

F. Baltar, E. Lindehoff, C. Legrand, 2019, Front. Microbiol..

Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions

J. Gasol, R. Massana, F. Baltar, 2015, The ISME Journal.

Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria

J. Lehtiö, F. Baltar, D. Lundin, 2017, Environmental microbiology.

growing and stationary phase marine bacteria

J. Lehtiö, F. Baltar, D. Lundin, 2016 .

Consequences of increased terrestrial dissolved organic matter and temperature on bacterioplankton community composition during a Baltic Sea mesocosm experiment

D. Lundin, J. Pinhassi, A. Andersson, 2015, AMBIO.

Prokaryotic community structure and respiration during long-term incubations

T. Berman, F. Baltar, J. Pinhassi, 2012, MicrobiologyOpen.

Response of Microbial Communities to Changing Climate Conditions During Summer Cyanobacterial Blooms in the Baltic Sea

C. Legrand, J. Pinhassi, Mireia Bertos-Fortis, 2018, Front. Microbiol..

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

Johannes Alneberg, Stefan Bertilsson, Thijs J G Ettema, 2017, Microbiome.

Title Seasonal dynamics and interactions among Baltic Sea prokaryotic and eukaryotic plankton assemblages Running title High-frequency planktonic dynamics and interactions

Anders F. Andersson, A. Andersson, C. Legrand, 2016 .

Effects of wastewater treatment plant effluent inputs on planktonic metabolic rates and microbial community composition in the Baltic Sea

D. Conley, E. Kritzberg, Saraladevi Muthusamy, 2016 .

Spatial variability in bacterioplankton community composition at the Skagerrak-Kattegat front.

A. Winding, S. Binnerup, J. Pinhassi, 2003 .

Optimized in vitro and in vivo expression of proteorhodopsin: a seven-transmembrane proton pump.

R. Neutze, N. Bonander, R. Berntsson, 2008, Protein expression and purification.

Ecological filtering drives rapid spatiotemporal dynamics in fish skin microbiomes.

Yeşerin Yıldırım, Anders Forsman, Hanna Berggren, 2024, Molecular ecology.

Ecological ﬁltering drives rapid spatiotemporal dynamics in ﬁsh skin microbiomes

Hanna Berggren, Oscar Nordahl, Petter Tibblin, 2022 .

1 Picozoa are archaeplastids without plastid

Jeremy G. Wideman, Thijs J. G. Ettema, P. Keeling, 2021 .

Use of Templates to Identify Source of Norovirus Outbreak

J. Pinhassi, J. Bonnedahl, J. Hernández, 2009 .

Seasonal succession in marine bacterioplankton

J. Pinhassi, Å. Hagström, Jarone Pinhassi, 2000 .

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.

Anders F. Andersson, A. Andersson, F. Baltar, 2015, Environmental microbiology.

Deltaproteobacteria and Spirochaetes-Like Bacteria Are Abundant Putative Mercury Methylators in Oxygen-Deficient Water and Marine Particles in the Baltic Sea

Anders F. Andersson, S. Bertilsson, A. Andersson, 2020, Frontiers in Microbiology.

Dynamics of Baltic Sea phages driven by environmental changes.

K. Holmfeldt, M. Middelboe, Benjamin Pontiller, 2021, Environmental microbiology.

Unscrambling Cyanobacteria Community Dynamics Related to Environmental Factors

M. Casini, H. Farnelid, C. Legrand, 2016, Front. Microbiol..

Microbial diversity in a continuous system based on rice husks for biodegradation of the azo dyes Reactive Red 2 and Reactive Black 5.

J. Pinhassi, J. Forss, U. Welander, 2013, Bioresource technology.

Contrasting effects of ocean acidification on the microbial food web under different trophic conditions

H. Sarmento, E. Calvo, C. Pelejero, 2016 .