James C. Phillips

发表

Scalable molecular dynamics with NAMD

Laxmikant V. Kalé, Klaus Schulten, Wei Wang, 2005, J. Comput. Chem..

NAMD2: Greater Scalability for Parallel Molecular Dynamics

Laxmikant V. Kale, Klaus Schulten, Milind Bhandarkar, 1999 .

Scalable molecular dynamics on CPU and GPU architectures with NAMD.

Yi Wang, Aleksei Aksimentiev, Klaus Schulten, 2020, The Journal of chemical physics.

QwikMD — Integrative Molecular Dynamics Toolkit for Novices and Experts

Klaus Schulten, John E. Stone, James C. Phillips, 2016, Scientific Reports.

Constant-pH Molecular Dynamics Simulations for Large Biomolecular Systems.

Klaus Schulten, James C. Phillips, Sunhwan Jo, 2017, Journal of chemical theory and computation.

Structural basis of co-translational quality control by ArfA and RF2 bound to ribosome

James C. Phillips, E. Tajkhorshid, J. Remis, 2017, Nature.

GPU Computing

John D. Owens, John E. Stone, James C. Phillips, 2008, Proceedings of the IEEE.

Accelerating molecular modeling applications with graphics processors

James C. Phillips, Peter L. Freddolino, David J. Hardy, 2007, J. Comput. Chem..

Multiple-Replica Strategies for Free-Energy Calculations in NAMD: Multiple-Walker Adaptive Biasing Force and Walker Selection Rules.

K. Schulten, C. Chipot, J. Comer, 2014, Journal of chemical theory and computation.

High-performance scalable molecular dynamics simulations of a polarizable force field based on classical Drude oscillators in NAMD.

Klaus Schulten, Alexander D. MacKerell, James C. Phillips, 2011, The journal of physical chemistry letters.

Enabling and scaling biomolecular simulations of 100 million atoms on petascale machines with a multicore-optimized message-driven runtime

Laxmikant V. Kalé, Chris Harrison, Chao Mei, 2011, 2011 International Conference for High Performance Computing, Networking, Storage and Analysis (SC).

Predicting the structure of apolipoprotein A-I in reconstituted high-density lipoprotein disks.

James C. Phillips, J. C. Phillips, K. Schulten, 1997, Biophysical journal.

Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins.

Klaus Schulten, James C. Phillips, James C Phillips, 2005, Biophysical journal.

Atomic detail visualization of photosynthetic membranes with GPU-accelerated ray tracing

Klaus Schulten, Melih Sener, Barry Isralewitz, 2016, Parallel Comput..

Visualization of Energy Conversion Processes in a Light Harvesting Organelle at Atomic Detail

Klaus Schulten, Melih Sener, John E. Stone, 2014 .

GPU/CPU Algorithm for Generalized Born/Solvent-Accessible Surface Area Implicit Solvent Calculations.

James C. Phillips, Klaus Schulten, James C Phillips, 2012, Journal of chemical theory and computation.

Parallel Generalized Born Implicit Solvent Calculations with NAMD.

James C. Phillips, Klaus Schulten, James C Phillips, 2011, Journal of chemical theory and computation.

Large scale simulation of protein mechanics and function.

Barry Isralewitz, James C. Phillips, Klaus Schulten, 2003, Advances in protein chemistry.

Algebraic Constructs for the Graphical and Computational Solution to Balancing Chemical Equations

James C. Phillips, James C. Phillips, 1998, Comput. Chem..

Implementation of scientific computing applications on the Cell Broadband Engine

Volodymyr V. Kindratenko, James C. Phillips, Guochun Shi, 2009, Sci. Program..

#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol

John D. McCalpin, James C. Phillips, Rommie E. Amaro, 2021, bioRxiv.

Long time and large size molecular dynamics simulations made feasible through new TeraGrid hardware and software

James C. Phillips, Peter L. Freddolino, Kirby L. Vandivort, 2008 .

NAMD goes quantum: An integrative suite for QM/MM simulations

Klaus Schulten, Frank Neese, Maximilian Scheurer, 2018, Nature Methods.

MODELING AFM TIP DYNAMICS THROUGH DIFFUSION IN TIME-PERIODIC POTENTIALS

K. Schulten, James C. Phillips, 1994 .

GPU Computing

John Douglas Owens, D. Luebke, Simon Green, 2008, Proceedings of the IEEE.

NAMD: Biomolecular Simulation on Thousands of Processors

Laxmikant V. Kalé, Sameer Kumar, Gengbin Zheng, 2002, ACM/IEEE SC 2002 Conference (SC'02).

GPU clusters for high-performance computing

John E. Stone, Volodymyr V. Kindratenko, Wen-mei W. Hwu, 2009, 2009 IEEE International Conference on Cluster Computing and Workshops.

Network Architecture

Eric J. Bohm, María Engracia Gómez Requena, Joseph C. Fogarty, 2011, Encyclopedia of Parallel Computing.

Speech/gesture interface to a visual computing environment for molecular biologists

Vladimir Pavlovic, Klaus Schulten, Thomas S. Huang, 1996, Proceedings of 13th International Conference on Pattern Recognition.