Bhyravabhotla Jayaram

发表

Onco-Regulon: an integrated database and software suite for site specific targeting of transcription factors of cancer genes

B. Jayaram, Navneet Tomar, Akhilesh Mishra, 2016, Database J. Biol. Databases Curation.

A computational pathway for bracketing native-like structures fo small alpha helical globular proteins.

B Jayaram, Pooja Narang, Surojit Bose, 2005, Physical chemistry chemical physics : PCCP.

The electrostatic potential of B‐DNA

B Jayaram, B Honig, K. Sharp, 1989, Biopolymers.

DNA-energetics-based analyses suggest additional genes in prokaryotes

B. Jayaram, Jalaj Gupta, G. Khandelwal, 2012, Journal of Biosciences.

Ab initio Protein Structure Prediction

Ankita Singh, Bhyravabhotla Jayaram, Rahul Kaushik, 2019, Encyclopedia of Bioinformatics and Computational Biology.

ProTSAV: A protein tertiary structure analysis and validation server.

Asheesh Shanker, Ankita Singh, Rahul Kaushik, 2016, Biochimica et biophysica acta.

Modeling DNA in aqueous solutions: theoretical and computer simulation studies on the ion atmosphere of DNA.

B Jayaram, B. Jayaram, D L Beyeridge, 1996, Annual review of biophysics and biomolecular structure.

Predicting the binding modes and sites of metabolism of xenobiotics.

B. Jayaram, G. Mukherjee, Pancham Lal Gupta, 2015, Molecular bioSystems.

Understanding the binding of inhibitors of matrix metalloproteinases by molecular docking, quantum mechanical calculations, molecular dynamics simulations, and a MMGBSA/MMBappl study.

Tanya Singh, B Jayaram, Olayiwola Adedotun Adekoya, 2015, Molecular bioSystems.

A rapid identification of hit molecules for target proteins via physico-chemical descriptors.

B. Jayaram, G. Mukherjee, Bhyravabhotla Jayaram, 2013, Physical chemistry chemical physics : PCCP.

Computational protocol for predicting the binding affinities of zinc containing metalloprotein–ligand complexes

Tarun Jain, B Jayaram, B. Jayaram, 2007, Proteins.

An all atom energy based computational protocol for predicting binding affinities of protein–ligand complexes

Tarun Jain, B Jayaram, B. Jayaram, 2005, FEBS letters.

Free energy component analysis for drug design: a case study of HIV-1 protease-inhibitor binding.

B. Jayaram, B Jayaram, P Kalra, 2001, Journal of medicinal chemistry.

From Ramachandran Maps to Tertiary Structures of Proteins.

Rahul Kaushik, B Jayaram, Debarati DasGupta, 2015, The journal of physical chemistry. B.

A statistical thermodynamic model for investigating the stability of DNA sequences from oligonucleotides to genomes.

D. Beveridge, G. Khandelwal, Bhyravabhotla Jayaram, 2014, Biophysical Journal.

A comprehensive automated computer-aided discovery pipeline from genomes to hit molecules

Shashank Shekhar, Ankita Singh, Bhyravabhotla Jayaram, 2020 .

A novel method SEProm for prokaryotic promoter prediction based on DNA structure and energetics

Priyanka Siwach, B Jayaram, Shruti Aggarwal, 2020, Bioinform..

Towards a universal structural and energetic model for prokaryotic promoters

Kelly M. Thayer, M. Bansal, W. Olson, 2018, bioRxiv.

DNA-water interactions distinguish messenger RNA genes from transfer RNA genes.

Garima Khandelwal, B. Jayaram, G. Khandelwal, 2012, Journal of the American Chemical Society.

A computational protocol for the discovery of lead molecules targeting DNA unique to pathogens.

B. Jayaram, N. Mrinal, Pradeep Pant, 2017, Methods.

Backbones of folded proteins reveal novel invariant amino acid neighborhoods.

B Jayaram, Aditya Mittal, B. Jayaram, 2011, Journal of biomolecular structure & dynamics.

Proceedings of the Indo-U.S. bilateral workshop on accelerating botanicals/biologics agent development research for cancer chemoprevention, treatment, and survival

F. Sarkar, E. Hawk, B. Aggarwal, 2013, Cancer medicine.

Curcumin specifically binds to the human calcium–calmodulin-dependent protein kinase IV: fluorescence and molecular dynamics simulation studies

F. Ahmad, S. Dey, H. Naz, 2016, Journal of biomolecular structure & dynamics.