Soumya Raychaudhuri

发表

Immunosuppression causes dynamic changes in expression QTLs in psoriatic skin

K. Ishigaki, Y. Baglaenko, Joseph R. Mears, 2022, medRxiv.

Dynamic regulatory elements in single-cell multimodal data capture autoimmune disease heritability and implicate key immune cell states

T. Amariuta, L. Donlin, S. Sakaue, 2023, medRxiv.

Dynamic regulatory elements in single-cell multimodal data implicate key immune cell states enriched for autoimmune disease heritability

T. Amariuta, L. Donlin, S. Sakaue, 2023, Nature Genetics.

Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes

K. Liao, Kamil Slowikowski, L. Donlin, 2023, Nature.

Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles.

M. Kanai, K. Dey, L. Donlin, 2024, Nature genetics.

Urine proteomic signatures of histological class, activity, chronicity, and treatment response in lupus nephritis

Goldman, N. Hacohen, L. Magder, 2023, medRxiv.

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians

S. Asgari, R. Calderón, L. Lecca, 2024, PLoS genetics.

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians

M. Gutierrez-Arcelus, S. Asgari, R. Calderón, 2023, medRxiv.

Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types

B. Truong, K. Dey, Samuel S. Kim, 2024, Nature communications.

Non-coding autoimmune risk variant defines role for ICOS in T peripheral helper cell development

Vitor R. C. Aguiar, M. Weirauch, H. Westra, 2024, Nature communications.

Automated multi-scale computational pathotyping (AMSCP) of inflamed synovial tissue

N. Hacohen, Fei Wang, Kamil Slowikowski, 2023, medRxiv.

The chromatin landscape of pathogenic transcriptional cell states in rheumatoid arthritis

L. Donlin, S. Sakaue, Kathryn Weinand, 2024, Nature communications.

Deciphering the impact of genomic variation on function.

William H. Majoros, Neva C. Durand, Alan F. Rubin, 2024, Nature.

Longitudinal patterns and predictors of response to standard-of-care therapy in lupus nephritis: data from the Accelerating Medicines Partnership Lupus Network

N. Hacohen, T. Eisenhaure, K. Kalunian, 2024, Arthritis research & therapy.

Integrated urine proteomics and renal single-cell genomics identify an interferon-Î3 response gradient in lupus nephritis

N. Hacohen, Ting Zhang, D. Wofsy, 2020 .

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

Vitor R. C. Aguiar, José Alquicira-Hernández, K. Dey, 2023, Nature Genetics.

Low-frequency and rare genetic variants associated with rheumatoid arthritis risk.

J. Cerhan, V. Kronzer, Soumya Raychaudhuri, 2024, Nature reviews. Rheumatology.

Fast, sensitive, and accurate integration of single cell data with Harmony

Fan Zhang, Kamil Slowikowski, Soumya Raychaudhuri, 2018, bioRxiv.