Shu-Hwa Chen

发表

cytoHubba: identifying hub objects and sub-networks from complex interactome

Chung-Yen Lin, Shu-Hwa Chen, Ming-Tat Ko, 2014, BMC Systems Biology.

Interplay of RsbM and RsbK controls the s activity of Bacillus cereusemi_2788 1..12

Chien-Cheng Chen, Shu-Hwa Chen, Lei-Chin Chen, 2012 .

AI4AMP: an Antimicrobial Peptide Predictor Using Physicochemical Property-Based Encoding Method and Deep Learning

Chung-Yen Lin, I-Hsuan Lu, Wen-Chih Cheng, 2021, mSystems.

AI4AMP: Sequence-based antimicrobial peptides predictor using physicochemical properties-based encoding method and deep learning

Chung-Yen Lin, I-Hsuan Lu, Wen-Chih Cheng, 2020, bioRxiv.

Interplay of RsbM and RsbK controls the σ(B) activity of Bacillus cereus.

Shu-Hwa Chen, Lei-Chin Chen, Jung-Chi Chen, 2012, Environmental microbiology.

SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies

Jan-Ming Ho, Yu-Jung Chang, Chung-Yen Lin, 2019, BMC Genomics.

Piwi reduction in the aged niche eliminates germline stem cells via Toll-GSK3 signaling

Chi-Hung Lin, Chung-Yen Lin, Shu-Hwa Chen, 2020, Nature Communications.

Sequencing and analysis of the transcriptome of the acorn worm Ptychodera flava, an indirect developing hemichordate.

Chung-Yen Lin, Shu-Hwa Chen, Hsiu-Chi Ting, 2014, Marine genomics.

Hubba: hub objects analyzer—a framework of interactome hubs identification for network biology

Chung-Yen Lin, Shu-Hwa Chen, Ming-Tat Ko, 2008, Nucleic Acids Res..

A Review of the Major Penaeid Shrimp EST Studies and the Construction of a Shrimp Transcriptome Database Based on the ESTs from Four Penaeid Shrimp

Jan-Ming Ho, Sheng-Yao Su, Chung-Yen Lin, 2011, Marine Biotechnology.

High-throughput profiling of influenza A virus hemagglutinin gene at single-nucleotide resolution

S. Nelson, R. Sun, Chung-Yen Lin, 2014, Scientific Reports.

Revealing the compositions of the intestinal microbiota of three Anguillid eel species using 16S rDNA sequencing

Chung-Yen Lin, Shu-Hwa Chen, Yu-San Han, 2018 .

AI4AVP: an antiviral peptides predictor in deep learning approach with generative adversarial network data augmentation

Chung-Yen Lin, Shu-Hwa Chen, I-Hsuan Lu, 2022, Bioinformatics advances.

Peptide-Based Drug Predictions for Cancer Therapy Using Deep Learning

Chung-Yen Lin, Shu-Hwa Chen, I-Hsuan Lu, 2022, bioRxiv.

Intelligent De Novo Design of Novel Antimicrobial Peptides against Antibiotic-Resistant Bacteria Strains

Chung-Yen Lin, Shu-Hwa Chen, Yang-hsin Shih, 2023, International journal of molecular sciences.

De Novo Assembly of the Whole Transcriptome of the Wild Embryo, Preleptocephalus, Leptocephalus, and Glass Eel of Anguilla japonica and Deciphering the Digestive and Absorptive Capacities during Early Development

Chung-Yen Lin, K. Tsukamoto, Shu-Hwa Chen, 2015, PloS one.

Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology

Chia-Ling Chen, Chung-Yen Lin, Shu-Hwa Chen, 2006, BMC Bioinformatics.

Spotlight: assembly of protein complexes by integrating graph clustering methods.

M. Ko, Chin-Wen Ho, C. Hsiung, 2013, Gene.

MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classification

Chung-Yen Lin, Shu-Hwa Chen, Chun-Chieh Liao, 2022, Bioinformatics.

MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classification

Chung-Yen Lin, Chun-Chieh Liao, Chia-Hsien Chuang, 2022, Bioinform..

A metagenomics study of hexabromocyclododecane degradation with a soil microbial community.

Chung-Yen Lin, Shu-Hwa Chen, Yang-hsin Shih, 2022, Journal of hazardous materials.

The degradation mechanisms of Rhodopseudomonas palustris toward hexabromocyclododecane by time-course transcriptome analysis

Chung-Yen Lin, Shu-Hwa Chen, Reuben Wang, 2021 .

EST and transcriptome analysis of cephalochordate amphioxus--past, present and future.

Shu-Hwa Chen, Chun-Yen Lin, Jr-Kai Yu, 2012, Briefings in functional genomics.

ESTand transcriptome analysis of cephalochordate amphioxusçpast , present and future

Shu-Hwa Chen, Chun-Yen Lin, Jr-Kai Yu, 2012 .

GABOLA: A Reliable Gap-Filling Strategy for de novo Chromosome-Level Assembly

Jan-Ming Ho, Yu-Jung Chang, Shu-Hwa Chen, 2021, bioRxiv.

Cloning of Two Crustacean Hyperglycemic Hormone Isoforms in Freshwater Giant Prawn (Macrobrachium rosenbergii): Evidence of Alternative Splicing

Chung-Yen Lin, Shu-Hwa Chen, C. Kuo, 2003, Marine Biotechnology.

TEA: the epigenome platform for Arabidopsis methylome study

Chung-Yen Lin, Sheng-Yao Su, Pao-Yang Chen, 2016, BMC Genomics.

A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles

M. Ko, Chin-Wen Ho, Chung-Yen Lin, 2010, BMC Bioinformatics.

Using high-throughput transcriptome sequencing to investigate the biotransformation mechanism of hexabromocyclododecane with Rhodopseudomonas palustris in water.

Chung-Yen Lin, Shu-Hwa Chen, Reuben Wang, 2019, The Science of the total environment.

Discovering Novel Antimicrobial Peptides in Generative Adversarial Network

Chung-Yen Lin, Yang-hsin Shih, Chi-Fong Ko, 2021, bioRxiv.

mySORT: A Web Framework by using Deconvolution Approach to Estimating Immune Cell Composition from Complex Tissues

Chung-Yen Lin, Shu-Hwa Chen, Bo-Yi Yu, 2020 .

Identification of a novel FN1–FGFR1 genetic fusion as a frequent event in phosphaturic mesenchymal tumour

A. Folpe, Yih-Leong Chang, Chen‐Tu Wu, 2015, The Journal of pathology.

Secretome from estrogen-responding human placenta-derived mesenchymal stem cells rescues ovarian function and circadian rhythm in mice with cyclophosphamide-induced primary ovarian insufficiency

T. Ling, Yen-Hua Huang, Quoc Thao Trang Pham, 2024, Journal of biomedical science.

Decoding the genome of bloodsucking midge Forcipomyia taiwana (diptera: Ceratopogonidae): Insights into odorant receptor expansion.

Szu-Chieh Wang, Jeng-yi Li, Chia-Hsien Chuang, 2024, Insect biochemistry and molecular biology.

Over-expression of AURKA, SKA3 and DSN1 contributes to colorectal adenoma to carcinoma progression

Sheng-Yao Su, Chung-Yen Lin, Yuan-Tsong Chen, 2016, Oncotarget.

Dual‐compartmental transcriptomic + proteomic analysis of a marine endosymbiosis exposed to environmental change

Chung-Yen Lin, Shu-Hwa Chen, Chii-Shiarng Chen, 2016, Molecular Ecology.

Compartment-specific transcriptomics in a reef-building coral exposed to elevated temperatures

Chung-Yen Lin, Shu-Hwa Chen, A. Mayfield, 2014, Molecular ecology.