Zhiming Dai

发表

Missing value imputation for microarray gene expression data using histone acetylation information

Jiang Wang, Xianhua Dai, Yangyang Deng, 2008, BMC Bioinformatics.

Antisense transcription is coupled to nucleosome occupancy in sense promoters

Xianhua Dai, Zhiming Dai, X. Dai, 2012, Bioinform..

TeloPIN: a database of telomeric proteins interaction network in mammalian cells

Dan Liu, Zhiming Dai, Xiaowei Xie, 2015, Database J. Biol. Databases Curation.

DNA signals at isoform promoters

Y. Xiong, X. Dai, Z. Dai, 2016, Scientific Reports.

Neighboring genes show interchromosomal colocalization after their separation.

Y. Xiong, X. Dai, Zhiming Dai, 2014, Molecular biology and evolution.

Gene expression profiling of somatic and pluripotent cells reveals novel pathways involved in reprogramming.

Q. Zhang, X. Dai, R. Hu, 2015, Genetics and molecular research : GMR.

Insights into active intragenic enhancers.

X. Dai, Z. Dai, Yong Yang, 2019, Biochemical and biophysical research communications.

SANPolyA: a deep learning method for identifying Poly(A) signals

Zhiming Dai, Haitao Yu, Z. Dai, 2020, Bioinform..

Genome-wide analysis of the effect of histone modifications on the coexpression of neighboring genes in Saccharomyces cerevisiae

Jiang-Hai Wang, X. Dai, Z. Dai, 2010, BMC Genomics.

The pattern and evolution of looped gene bendability.

Y. Xiong, X. Dai, Zhiming Dai, 2014, Molecular biology and evolution.

Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast

X. Dai, Z. Dai, Zhiming Dai, 2011, Nucleic acids research.

Identifying Circular RNA and Predicting Its Regulatory Interactions by Machine Learning

Qingyu Liu, Zhiming Dai, Guishan Zhang, 2020, Frontiers in Genetics.

Gene Expression Divergence is Coupled to Evolution of DNA Structure in Coding Regions

Xianhua Dai, Zhiming Dai, X. Dai, 2011, PLoS Comput. Biol..

Pan-cancer analysis identifies telomerase-associated signatures and cancer subtypes

Feng Li, Z. Songyang, Y. Xiong, 2019, Molecular Cancer.

Transcription Factors Indirectly Regulate Genes through Nuclear Colocalization

Z. Dai, Zhiming Dai, 2019, Cells.

SRHiC: A Deep Learning Model to Enhance the Resolution of Hi-C Data

Zhilan Li, Zhiming Dai, Z. Dai, 2020, Frontiers in Genetics.

A Rate-limited Step Guided by Different Regulation of Chromatin Modifiers Should be Undergone after Initiation Phase in Cellular Reprogramming

X. Dai, R. Hu, Z. Dai, 2016 .

Insights into the combinatorial effects of histone modifications in yeast using association rule mining

Jiang Wang, Xianhua Dai, Yangyang Deng, 2010, 2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA).

Identifying the Combinatorial Effects of Histone Modifications by Association Rule Mining in Yeast

Xianhua Dai, Yangyang Deng, Zhiming Dai, 2010, Evolutionary bioinformatics online.

Genome-wide analysis of interactions between ATP-dependent chromatin remodeling and histone modifications

Jiang-Hai Wang, X. Dai, Z. Dai, 2009, BMC Genomics.

Transcriptional interaction-assisted identification of dynamic nucleosome positioning

Jiang Wang, Xianhua Dai, Yangyang Deng, 2009, BMC Bioinformatics.

Two distinct modes of nucleosome modulation associated with different degrees of dependence of nucleosome positioning on the underlying DNA sequence

Xianhua Dai, Yangyang Deng, Zhiming Dai, 2009, BMC Genomics.

Prediction of CRISPR/Cas9 single guide RNA cleavage efficiency and specificity by attention-based convolutional neural networks

X. Dai, Z. Dai, Guishan Zhang, 2021, Computational and structural biotechnology journal.

A De Novo Genome Assembly Algorithm for Repeats and Nonrepeats

X. Dai, S. Lian, Z. Dai, 2014, BioMed research international.

Applying Discrete Fourier Transformation to DNA Motifs Identification

Xianhua Dai, Zhiming Dai, X. Dai, 2006, 2006 International Conference on Computational Intelligence and Security.

C-RNNCrispr: Prediction of CRISPR/Cas9 sgRNA activity using convolutional and recurrent neural networks

Zhiming Dai, Xianhua Dai, Guishan Zhang, 2020, Computational and structural biotechnology journal.

Dissecting Embryonic Stem Cell Self-Renewal and Differentiation Commitment from Quantitative Models.

X. Dai, R. Hu, Z. Dai, 2016, DNA and cell biology.