Kristian Rother

发表

HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology

C. Gille, S. Bulik, M. König, 2010, Molecular systems biology.

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

J. Bujnicki, K. Rother, W. Dawson, 2015, Nucleic acids research.

structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

Christopher A. Lavender, K. Weeks, E. Westhof, 2012 .

Template-Based and Template-Free Modeling of RNA 3D Structure: Inspirations from Protein Structure Modeling

Janusz M. Bujnicki, Tomasz Puton, Michal Boniecki, 2012 .

MODOMICS: a database of RNA modification pathways—2013 update

J. Bujnicki, Sebastian Kalinowski, K. Rother, 2012, Nucleic Acids Res..

Towards Virtual Reality Crisis Simulation as a Tool for Usability Testing of Crisis Related Interactive Systems

Kristian Rother, Simon Nestler, Inga Karl, 2015, Int. J. Inf. Syst. Crisis Response Manag..

Efficient use of a protein structure annotation database

Kristian Rother, K. Rother, Kristian Rother, 2007 .

MODOMICS: a database of RNA modification pathways. 2008 update

Joanna M. Kasprzak, Katarzyna H. Kaminska, J. Bujnicki, 2008, Nucleic acids research.

IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities.

J. Gasteiger, S. Bulik, A. Hoppe, 2010, Biophysical journal.

Columba: Multidimensional Data Integration of Protein Annotations

Thomas Steinke, Ulf Leser, Ina Koch, 2004, DILS.

RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

Christopher A. Lavender, K. Weeks, A. Serganov, 2012, RNA.

ModeRNA: a tool for comparative modeling of RNA 3D structure

J. Bujnicki, Tomasz Puton, K. Rother, 2011, Nucleic acids research.

RNA and protein 3D structure modeling: similarities and differences

J. Bujnicki, Tomasz Puton, Magdalena Rother, 2011, Journal of molecular modeling.

From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal.

R. Knight, J. Heringa, S. Smit, 2008, RNA.

Computational methods for prediction of protein-RNA interactions.

J. Bujnicki, Tomasz Puton, L. Kozlowski, 2012, Journal of structural biology.

Suffix techniques as a rapid method for RNA substructure search.

Janusz M Bujnicki, Robert Preissner, Kristian Rother, 2008, Genome informatics. International Conference on Genome Informatics.

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction

J. Bujnicki, Tomasz Puton, L. Kozlowski, 2014, Nucleic acids research.

CompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure prediction

J. Bujnicki, Tomasz Puton, L. Kozlowski, 2013, Nucleic acids research.

Voronoia4RNA—a database of atomic packing densities of RNA structures and their complexes

Kristian Rother, Alexander S. Rose, Johanna K. S. Tiemann, 2012, Nucleic Acids Res..

RNAmap2D – calculation, visualization and analysis of contact and distance maps for RNA and protein-RNA complex structures

Kristian Rother, Janusz M. Bujnicki, Michal J. Pietal, 2012, BMC Bioinformatics.

The complex of tmRNA–SmpB and EF-G on translocating ribosomes

P. Ivanov, T. Mielke, C. Spahn, 2012, Nature.

A toolbox for developing bioinformatics software

Kristian Rother, Janusz M. Bujnicki, Wojciech Potrzebowski, 2012, Briefings Bioinform..

RNA tertiary structure prediction with ModeRNA

Kristian Rother, Janusz M. Bujnicki, Tomasz Puton, 2011, Briefings Bioinform..

Automated modeling of RNA 3D structure.

Janusz M Bujnicki, Kristian Rother, Magdalena Rother, 2014, Methods in molecular biology.

structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

Christopher A. Lavender, K. Weeks, A. Serganov, 2012 .

Bioinformatics Applications Note Structural Bioinformatics Moderna Server: an Online Tool for Modeling Rna 3d Structures

Kristian Rother, Janusz M. Bujnicki, Tomasz Puton, 2022 .

Voronoia: analyzing packing in protein structures

Kristian Rother, Robert Preissner, Björn A. Grüning, 2008, Nucleic Acids Res..

RNApathwaysDB—a database of RNA maturation and decay pathways

Kristian Rother, Janusz M. Bujnicki, Kaja Milanowska, 2012, Nucleic Acids Res..

Molecular flexibility in protein-DNA interactions.

Kristian Rother, Stefan Günther, Cornelius Frömmel, 2006, Bio Systems.

MODOMICS: a database of RNA modification pathways. 2008 update

Joanna M. Kasprzak, Katarzyna H. Kaminska, J. Bujnicki, 2008, Nucleic Acids Research.

REPAIRtoire—a database of DNA repair pathways

Kristian Rother, Jan Kosinski, Janusz M. Bujnicki, 2010, Nucleic Acids Res..