Mário Ramirez

发表

TypOn: the microbial typing ontology

Keith A. Jolley, James E. Bray, Alexandre P. Francisco, 2014, Journal of Biomedical Semantics.

Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach

Alexandre P. Francisco, João A. Carriço, Miguel Bugalho, 2009, BMC Bioinformatics.

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

Alexandre P. Francisco, Cátia Vaz, João A. Carriço, 2017, Bioinform..

PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees

Alexandre P. Francisco, Cátia Vaz, João A. Carriço, 2016, Nucleic Acids Res..

DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics

João A. Carriço, Mário Ramirez, Natacha Couto, 2019, bioRxiv.

Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement

Jonas S. Almeida, João A. Carriço, Mário Ramirez, 2007, BMC Bioinformatics.

Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data

João A. Carriço, Valeria Bortolaia, Mário Ramirez, 2018, Nucleic Acids Res..

Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas

Mickael Silva, Mário Ramirez, João A Carriço, 2020, Nucleic Acids Res..

Epidemiological Surveillance and Typing Methods to Track Antibiotic Resistant Strains Using High Throughput Sequencing.

Mickael Silva, Mário Ramirez, Bruno Ribeiro-Gonçalves, 2017, Methods in molecular biology.

Optimal control and analysis of two-color genomotyping experiments using bacterial multistrain arrays

Mário Ramirez, M. Ramirez, J. Melo-Cristino, 2008, BMC Genomics.

Evaluation of Jackknife and Bootstrap for Defining Confidence Intervals for Pairwise Agreement Measures

João A. Carriço, Mário Ramirez, João André Carriço, 2011, PloS one.