Daniel A. Charlebois

发表

An Algorithm for the Stochastic Simulation of Gene Expression and Heterogeneous Population Dynamics

Jukka Intosalmi, Dawn Fraser, Mads Kaern, 2011, 1110.6469.

An Accelerated Method for Simulating Population Dynamics

Mads Kærn, Daniel A. Charlebois, Mads Kærn, 2013 .

An algorithm for the stochastic simulation of gene expression and cell population dynamics

Daniel A. Charlebois, 2010 .

CellLine, a stochastic cell lineage simulator

Andre S. Ribeiro, Jason Lloyd-Price, Daniel A. Charlebois, 2007, Bioinform..

Backward evolution from gene network dynamics

Gábor Balázsi, Daniel A. Charlebois, Merzu Kebede Belete, 2016, bioRxiv.

Modeling cell population dynamics

Gábor Balázsi, Daniel A. Charlebois, G. Balázsi, 2018, Silico Biol..

Role of network-mediated stochasticity in mammalian drug resistance

Daniel A. Charlebois, G. Balázsi, Dmitry Nevozhay, 2019, Nature Communications.

Effect and evolution of gene expression noise on the fitness landscape.

Daniel A. Charlebois, 2015, Physical review. E, Statistical, nonlinear, and soft matter physics.

Multiscale effects of heating and cooling on genes and gene networks

Kevin Hauser, Gábor Balázsi, Daniel A. Charlebois, 2018, Proceedings of the National Academy of Sciences.

Efflux Pump Control Alters Synthetic Gene Circuit Function.

Daniel A. Charlebois, C. Pál, G. Balázsi, 2016, ACS synthetic biology.

Stochastic Gene Expression and the Processing and Propagation of Noisy Signals in Genetic Networks

Daniel A. Charlebois, Mads Kærn, T. Perkins, 2011 .

CellLine , a stochastic cell lineage simulator : Applications

Daniel A. Charlebois, A. Ribeiro, J. Lloyd-Price, 2007 .

Functional effects of heating and cooling gene networks

Daniel A. Charlebois, G. Balázsi, Kevin Hauser, 2017, bioRxiv.

Engineered gene networks enable non‐genetic drug resistance and enhanced cellular robustness

Daniel A. Charlebois, Mads Kaern, Ian J. Roney, 2019, Engineering Biology.

Machine Learning for Antimicrobial Resistance Research and Drug Development

Daniel A. Charlebois, Joshua D. Guthrie, S. Shankarnarayan, 2022 .

Non-genetic resistance facilitates survival while hindering the evolution of drug resistance due to intraspecific competition

Daniel A. Charlebois, Joshua Guthrie, 2022, Physical biology.

Negative Regulation Gene Circuits for Efflux Pump Control.

Daniel A. Charlebois, G. Balázsi, Dmitry Nevozhay, 2018, Methods in molecular biology.

Advancing Antimicrobial Resistance Research Through Quantitative Modeling and Synthetic Biology

Daniel A. Charlebois, K. Farquhar, H. Flohr, 2020, Frontiers in Bioengineering and Biotechnology.

Coherent feedforward transcriptional regulatory motifs enhance drug resistance.

Daniel A Charlebois, Gábor Balázsi, Mads Kærn, 2014, Physical review. E, Statistical, nonlinear, and soft matter physics.

Frequency‐dependent selection: a diversifying force in microbial populations

Daniel A. Charlebois, G. Balázsi, 2016, Molecular systems biology.

Does transcriptional heterogeneity facilitate the development of genetic drug resistance?

Daniel A. Charlebois, K. Farquhar, Samira Rasouli koohi, 2021, BioEssays : news and reviews in molecular, cellular and developmental biology.

Synthetic Gene Circuits for Antimicrobial Resistance and Cancer Research

Daniel A. Charlebois, G. Balázsi, K. Farquhar, 2021, Synthetic Genomics - From Natural to Synthetic Genomes [Working Title].

Lattice-based simulation of the effects of nutrient concentration and magnetic field exposure on yeast colony growth and morphology

Daniel A. Charlebois, Rebekah Hall, 2021, 2107.08121.

Lattice-based Monte Carlo simulation of the effects of nutrient concentration and magnetic field exposure on yeast colony growth and morphology

Daniel A. Charlebois, Rebekah Hall, 2021, Silico Biol..

Identification and Elimination of Antifungal Tolerance in Candida auris

Daniel A. Charlebois, S. Shankarnarayan, S. R. Koohi, 2022, bioRxiv.

Gene expression noise facilitates adaptation and drug resistance independently of mutation.

Daniel A Charlebois, Mads Kaern, Daniel A. Charlebois, 2011, Physical review letters.

SUPPORTING INFORMATION ( SI ) APPENDIX : Multiscale effects of heating and cooling genes and gene networks

Daniel A. Charlebois, G. Balázsi, Kevin Hauser, 2018 .

Quantitative systems-based prediction of antimicrobial resistance evolution

Daniel A. Charlebois, 2023, NPJ systems biology and applications.

Fitness effects of a demography-dispersal trade-off in expanding Saccharomyces cerevisiae mats

Daniel A. Charlebois, Rebekah Hall, Akila Bandara, 2024, Physical biology.