Chunlin Xiao

发表

Peter B. McGarvey, Robert S. Ledley, Cathy H. Wu, 2000, Nucleic Acids Res..

Timothy B. Stockwell, William H. Majoros, Helen M. Moore, 2001, Science.

An integrated map of genetic variation from 1,092 human genomes

Kenny Q. Ye, Mauricio O. Carneiro, Francisco M. De La Vega, 2012, Nature.

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.

Hanlee P. Ji, G. M. Fischer, Stephen C. Harris, 2006, Nature biotechnology.

The complete sequence of a human genome

Aaron M. Streets, Ira M. Hall, Nathan D. Olson, 2021, bioRxiv.

Extensive sequencing of seven human genomes to characterize benchmark reference materials

Alexa B. R. McIntyre, Grace X. Y. Zheng, Mark J. P. Chaisson, 2015, Scientific Data.

Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: gene expression analyses across three different platforms

T. Sørlie, H. Johnsen, A. Børresen-Dale, 2006, BMC Genomics.

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Hugo Y. K. Lam, Winnie S. Liang, Daoud M. Meerzaman, 2021, Nature Biotechnology.

A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome

William H. Majoros, Randall A. Bolanos, Ashwinikumar K. Naik, 2002, Science.

An open resource for accurately benchmarking small variant and reference calls

Chunlin Xiao, Marc Salit, Justin M Zook, 2019, Nature Biotechnology.

A complete reference genome improves analysis of human genetic variation

Ryan M. Layer, Nathan D. Olson, Nancy F. Hansen, 2021, bioRxiv.

Title: A complete human reference genome improves variant calling for population and clinical genomics

Ryan M. Layer, Nathan D. Olson, Nancy F. Hansen, 2021 .

A robust benchmark for detection of germline large deletions and insertions

Ken Chen, Adam M. Phillippy, Iman Hajirasouliha, 2020, Nature Biotechnology.

A robust benchmark for germline structural variant detection

Sergey Koren, Adam M. Phillippy, Iman Hajirasouliha, 2019, bioRxiv.

Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

G. Schroth, W. Xiao, J. Zook, 2022, Genome biology.

Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

Daoud M. Meerzaman, A. Pang, W. Xiao, 2022, Genome biology.

Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing

Thomas M. Blomquist, Daoud M. Meerzaman, S. Sherry, 2021, Nature Biotechnology.

Personalized genome assembly for accurate cancer somatic mutation discovery using tumor-normal paired reference samples

Valerie A. Schneider, W. Xiao, C. Xiao, 2021, bioRxiv.

Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance

K. Katz, K. Pruitt, C. Xiao, 2022, bioRxiv.

Achieving robust somatic mutation detection with deep learning models derived from reference data sets of a cancer sample

Luis V. Santana-Quintero, W. Xiao, M. Mohiyuddin, 2022, Genome Biology.

Establishing reference samples for detection of somatic mutations and germline variants with NGS technologies

Hugo Y. K. Lam, Daoud M. Meerzaman, S. Sherry, 2019, bioRxiv.

Curated variation benchmarks for challenging medically-relevant autosomal genes

Mark T. W. Ebbert, Nathan D. Olson, Karen H. Miga, 2021, Nature Biotechnology.

The 1000 Genomes Project: data management and community access

Brendan W. Vaughan, R. Leinonen, S. Sherry, 2012, Nature Methods.

Towards a Comprehensive Variation Benchmark for Challenging Medically-Relevant Autosomal Genes

Mark T. W. Ebbert, Nathan D. Olson, Karen H. Miga, 2021, bioRxiv.

Benchmarking challenging small variants with linked and long reads

Nathan D. Olson, Ian T. Fiddes, Wayne E. Clarke, 2020, bioRxiv.

Protein Information Resource: a community resource for expert annotation of protein data

Peter B. McGarvey, Robert S. Ledley, Cathy H. Wu, 2001, Nucleic Acids Res..

iProClass: an integrated, comprehensive and annotated protein classification database

Cathy H. Wu, Hongzhan Huang, Winona C. Barker, 2001, Nucleic Acids Res..