Vincent Miele

发表

Deciphering the connectivity structure of biological networks using MixNet

Franck Picard, Vincent Miele, Jean-Jacques Daudin, 2009, BMC Bioinformatics.

Spatially constrained clustering of ecological networks

Franck Picard, Vincent Miele, St'ephane Dray, 2014, 1402.5319.

Ultra-fast sequence clustering from similarity networks with SiLiX

Vincent Miele, Simon Penel, Laurent Duret, 2011, BMC Bioinformatics.

Nine quick tips for analyzing network data

Vincent Miele, Stéphane Robin, Catherine Matias, 2019, PLoS Comput. Biol..

New developments in KisSplice: Combining local and global transcriptome assemblers to decipher splicing in RNA-seq data

Vincent Miele, Rayan Chikhi, Pierre Peterlongo, 2013 .

Strategies for online inference of model-based clustering in large and growing networks

Christophe Ambroise, Franck Picard, Vincent Miele, 2009, 0910.2034.

Core-periphery structure in mutualistic networks: an epitaph for nestedness?

Vincent Miele, Diego P. Vázquez, Rodrigo Ramos-Jiliberto, 2020, bioRxiv.

Navigating in a Sea of Repeats in RNA-seq without Drowning pdf

Vincent Miele, Marie-France Sagot, Camille Marchet, 2014, WABI.

Non-trophic interactions strengthen the diversity—functioning relationship in an ecological bioenergetic network model

Vincent Miele, Rodrigo Ramos-Jiliberto, Christian Guill, 2019, PLoS Comput. Biol..

Random graph clustering

Christophe Ambroise, Franck Picard, Vincent Miele, 2015 .

High-quality sequence clustering guided by network topology and multiple alignment likelihood

Franck Picard, Vincent Miele, Simon Penel, 2012, Bioinform..

Revealing the hidden structure of dynamic ecological networks

Vincent Miele, Catherine Matias, C. Matias, 2017, Royal Society Open Science.

A Reversible Jump Markov Chain Monte Carlo Algorithm for Bacterial Promoter Motifs Discovery

Vincent Miele, Pierre Nicolas, Florence Muri, 2006, J. Comput. Biol..

Strategies for Online Inference of Model-Based Clustering in large Networks pdf

Christophe Ambroise, Franck Picard, Vincent Miele, 2009, ArXiv.

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

Vincent Miele, Camille Marchet, Marie-France Sagot, 2017, Algorithms for Molecular Biology.

seq++: analyzing biological sequences with a range of Markov-related models

Vincent Miele, David Robelin, Grégory Nuel, 2005, Bioinform..

Diversity indices for ecological networks: a unifying framework using Hill numbers.

Wilfried Thuiller, Vincent Miele, Stéphane Dray, 2019, Ecology letters.

Revisiting giraffe photo-identification using deep learning and network analysis

Vincent Miele, Simon Chamaillé-Jammes, Christophe Bonenfant, 2020, bioRxiv.

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Vincent Miele, Pierre Peterlongo, Camille Marchet, 2016, GigaScience.

Fast and Parallel Algorithm for Population-Based Segmentation of Copy-Number Profiles

Franck Picard, Vincent Miele, Guillem Rigaill, 2013, CIBB.

Statistical clustering of temporal networks through a dynamic stochastic block model

Vincent Miele, Catherine Matias, C. Matias, 2015, 1506.07464.

Fast online graph clustering via Erdös-Rényi mixture

Christophe Ambroise, Vincent Miele, Hugo Zanghi, 2008, Pattern Recognit..

libfbat: a C++ library for family based association testing

Vincent Miele, Yousri Slaoui, Gregory Nuel, 2008 .

Quantifying the overall effect of biotic interactions on species communities along environmental gradients

Wilfried Thuiller, Vincent Miele, Catherine Matias, 2021 .

An appraisal of graph embeddings for comparing trophic network architectures

Wilfried Thuiller, Vincent Miele, Christophe Botella, 2021, Methods in Ecology and Evolution.

How Structured Is the Entangled Bank? The Surprisingly Simple Organization of Multiplex Ecological Networks Leads to Increased Persistence and Resilience

Sonia Kéfi, Vincent Miele, E. Berlow, 2016, PLoS biology.

Core-periphery dynamics in a plant-pollinator network.

Vincent Miele, Rodrigo Ramos-Jiliberto, Diego P Vázquez, 2020, The Journal of animal ecology.

DNA physical properties determine nucleosome occupancy from yeast to fly

Vincent Miele, Cédric Vaillant, Claude Thermes, 2008, Nucleic acids research.