D. Thirumalai

发表

Charge density of cation determines inner versus outer shell coordination to phosphate in RNA

H. T. Nguyen, D. Thirumalai, 2020, bioRxiv.

Theory of the molecular transfer model for proteins with applications to the folding of the src-SH3 domain.

Govardhan Reddy, D. Thirumalai, Zhenxing Liu, 2012, The journal of physical chemistry. B.

Urea denaturation by stronger dispersion interactions with proteins than water implies a 2-stage unfolding

Ruhong Zhou, D Thirumalai, Lan Hua, 2008, Proceedings of the National Academy of Sciences.

Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations.

D. Thirumalai, S. Woodson, S. Heilman-Miller, 2001, Journal of molecular biology.

Theory of Biopolymer Stretching at High Forces.

D. Thirumalai, N. M. Toan, D. Thirumalai, 2009, Macromolecules.

On the origin of the unusual behavior in the stretching of single-stranded DNA.

D. Thirumalai, N. M. Toan, Devarajan Thirumalai, 2012, The Journal of chemical physics.

Cellular signaling networks function as generalized Wiener-Kolmogorov filters to suppress noise

Michael Hinczewski, D. Thirumalai, D. Thirumalai, 2014, 1406.3290.

Molecular crowding enhances native state stability and refolding rates of globular proteins.

D. Thirumalai, D. Klimov, M. Cheung, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Mean-field Potts glass model: Initial-condition effects on dynamics and properties of metastable states.

Thirumalai, Kirkpatrick, D. Thirumalai, 1988, Physical review. B, Condensed matter.

Dissecting the Assembly of Aβ16–22 Amyloid Peptides into Antiparallel β Sheets

D. Klimov, D. Thirumalai, 2003 .

Hydrophobic and Ionic-Interactions in Bulk and Confined Water with Implications for Collapse and Folding of Proteins

D. Thirumalai, Jie Chen, S. Vaitheeswaran, 2011, 1105.1184.

Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water.

R Elber, R. Elber, D. Beglov, 1997, Journal of molecular biology.

Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics.

D. Thirumalai, S. Woodson, J. Pan, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Native topology determines force-induced unfolding pathways in globular proteins.

D. Thirumalai, D. Klimov, D. Thirumalai, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Universal relations in the self-assembly of proteins and RNA

D Thirumalai, D. Thirumalai, 2014, Physical biology.

Kinetics of allosteric transitions in S-adenosylmethionine riboswitch are accurately predicted from the folding landscape.

D. Thirumalai, Jong-Chin Lin, D. Thirumalai, 2013, Journal of the American Chemical Society.

Dramatic shape changes occur as Cytochrome c folds

D. Thirumalai, R. Elber, Serdal Kirmizialtin, 2020, bioRxiv.

Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism.

D Thirumalai, D. Thirumalai, D. Klimov, 1998, Journal of molecular biology.

Continuous anisotropic representation of coarse-grained potentials for proteins by spherical harmonics synthesis.

D Thirumalai, J. Straub, N. Buchete, 2004, Journal of molecular graphics & modelling.

Differences in ion-RNA binding modes due to charge density variations explain the stability of RNA in monovalent salts

D. Thirumalai, Serdal Kirmizialtin, Anja Henning-Knechtel, 2022, bioRxiv.

Perspective: Reaches of chemical physics in biology.

M. Gruebele, D. Thirumalai, Devarajan Thirumalai, 2013, The Journal of chemical physics.

Dissecting the assembly of A β 16-22 amyloid peptides into antiparallel β-sheets

D. Thirumalai, D. Klimov, D. Thirumalai, 2002 .

Structures and free-energy landscapes of the wild type and mutants of the Abeta(21-30) peptide are determined by an interplay between intrapeptide electrostatic and hydrophobic interactions.

D Thirumalai, John E Straub, J. Straub, 2008, Journal of molecular biology.

Entropy and enthalpy of interaction between amino acid side chains in nanopores.

D. Thirumalai, S. Vaitheeswaran, D. Thirumalai, 2014, The Journal of chemical physics.

Interactions between amino acid side chains in cylindrical hydrophobic nanopores with applications to peptide stability

D. Thirumalai, S. Vaitheeswaran, D. Thirumalai, 2008, Proceedings of the National Academy of Sciences.