Adam L. MacLean

SoptSC: Similarity matrix optimization for clustering, lineage, and signaling inference

Qing Nie, Shuxiong Wang, Adam L. MacLean, 2018 .

Cell Lineage and Communication Network Inference via Optimization for Single-Cell Transcriptomics

Qing Nie, Shuxiong Wang, Adam L. MacLean, 2019 .

RVAgene: generative modeling of gene expression time series data

Adam L. MacLean, Raktim Mitra, Adam L. Maclean, 2020, bioRxiv.

Conditional random matrix ensembles and the stability of dynamical systems

Paul Kirk, Adam L. MacLean, Michael P.H. Stumpf, 2015, 1505.02920.

Feedback mechanisms control coexistence in a stem cell model of acute myeloid leukaemia

Adam L. MacLean, Michael P.H. Stumpf, Helena L. Crowell, 2016, Journal of theoretical biology.

Exploring intermediate cell states through the lens of single cells

Qing Nie, Tian Hong, Adam L. MacLean, 2018, Current opinion in systems biology.

Cellular population dynamics control the robustness of the stem cell niche

Paul D. W. Kirk, Michael P. H. Stumpf, Adam L. MacLean, 2015, Biology Open.

Low-rank Similarity Matrix Optimization Identifies Subpopulation Structure and Orders Single Cells in Pseudotime

Qing Nie, Shuxiong Wang, Adam L. MacLean, 2017, bioRxiv.