Bennett M. Shaw

Accurate subspecies-level identification of clinically significant Mycobacterium avium and Mycobacterium intracellulare by whole-genome sequencing.

Shangxin Yang, O. Garner, Benjamin von Bredow, 2023, Journal of microbiological methods.

Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants

Pardis C Sabeti, Cheri M Ackerman, Sri Gowtham Thakku, 2022, Nature Medicine.

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing

P. Sabeti, Steven K. Reilly, D. Park, 2021, bioRxiv.

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: a guide and case study in setting up an emergency-use, laboratory-developed molecular microbiological assay

Melis N. Anahtar, Julie M. Batten, Lauren L. Ritterhouse, 2021, Journal of Clinical Pathology.

Determining the Incidence of Asymptomatic SARS-CoV-2 Among Early Recipients of COVID-19 Vaccines (DISCOVER-COVID-19): A Prospective Cohort Study of Healthcare Workers Before, During and After Vaccination

D. Finkelstein, M. Siedner, B. Healy, 2021, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows

Pardis C Sabeti, R. Tewhey, Steven K. Reilly, 2021, Nature Microbiology.

Susceptibility-weighted imaging reveals cerebral microvascular injury in severe COVID-19

E. Brown, R. Gonzalez, M. Frosch, 2021, Journal of the Neurological Sciences.

Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients

Melis N. Anahtar, Pardis C Sabeti, E. Rosenberg, 2021, Journal of the Neurological Sciences.

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events

Melis N. Anahtar, Katherine C DeRuff, Pardis C Sabeti, 2020, Science.