Sema Kachalo

Geometric order in proliferating epithelia: Impact of rearrangements and cleavage plane orientation

Jie Liang, Sema Kachalo, Hammad Naveed, 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

Computational analysis of microarray gene expression profiles: clustering, classification, and beyond

Jie Liang, Seman Kachalo, S. Kachalo, 2002 .

Accuracy of functional surfaces on comparatively modeled protein structures

Jie Liang, Sema Kachalo, Zheng Ouyang, 2011, Journal of Structural and Functional Genomics.

Mechanical Model of Geometric Cell and Topological Algorithm for Cell Dynamics from Single-Cell to Formation of Monolayered Tissues with Pattern

S. Kachalo, Hammad Naveed, Youfang Cao, 2015, PloS one.

NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks

Eduardo D. Sontag, Bhaskar DasGupta, Réka Albert, 2008, Bioinform..

A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence

Riccardo Dondi, Eduardo D. Sontag, Alex Zelikovsky, 2007, WABI.

Protein folding dynamics via quantification of kinematic energy landscape.

Jie Liang, S. Kachalo, Jie Liang, 2006, Physical review letters.

Geometric structures of proteins for understanding folding , discriminating natives and predicting biochemical functions

S. Kachalo, Jie Liang, Y. Tseng, 2009 .

Mechanisms of Regulating Tissue Elongation in Drosophila Wing: Impact of Oriented Cell Divisions, Oriented Mechanical Forces, and Reduced Cell Size

Jie Liang, Lisa X. Xu, Sema Kachalo, 2014, PloS one.