Daisuke Kihara

Domain-PFP allows protein function prediction using function-aware domain embedding representations

Yuki Kagaya, Nabil Ibtehaz, Daisuke Kihara, 2023, Communications biology.

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Johnathan D. Guest, Adam K. Sieradzan, Charles W Christoffer, 2023, Proteins.

DiffModeler: Large Macromolecular Structure Modeling in Low-Resolution Cryo-EM Maps Using Diffusion Model

Genki Terashi, Daisuke Kihara, Xiao Wang, 2024, bioRxiv.

NuFold: A Novel Tertiary RNA Structure Prediction Method Using Deep Learning with Flexible Nucleobase Center Representation

Xiao Wang, Yuki Kagaya, Tsukasa Nakamura, 2023, bioRxiv.

GO2Sum: Generating Human Readable Functional Summary of Proteins from GO Terms

Swagarika Jaharlal Giri, Nabil Ibtehaz, Daisuke Kihara, 2023, bioRxiv.

Assembly of Protein Complexes In and On the Membrane with Predicted Spatial Arrangement Constraints.

Charles W Christoffer, K. Harini, Daisuke Kihara, 2024, Journal of molecular biology.

Chromosome level genome assembly of the Etruscan shrew Suncus etruscus

Mark J. P. Chaisson, Swagarika Jaharlal Giri, S. Pelan, 2024, Scientific data.