Monica Valecha

发表

Single-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues

N. Beerenwinkel, D. Posada, J. Kuipers, 2023, Cell genomics.

Single-cell phylogenies reveal deviations from clock-like, neutral evolution in cancer and healthy tissues

N. Beerenwinkel, D. Posada, J. Kuipers, 2022, bioRxiv.

Molecular landscape and subtype-specific therapeutic response of nasopharyngeal carcinoma revealed by integrative pharmacogenomics

Ping Chen, Jiaolin Bao, Wenhui Hao, 2021, Nature Communications.

SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data

N. Beerenwinkel, D. Posada, J. Kuipers, 2022, bioRxiv.

BRCA1 represses DNA replication initiation through antagonizing estrogen signaling and maintains genome stability in parallel with WEE1‐MCM2 signaling during pregnancy

C. Deng, M. Aladjem, Xiaoling Xu, 2018, Human molecular genetics.

Clonality and timing of relapsing colorectal cancer metastasis revealed through whole-genome single-cell sequencing

D. Posada, I. Sauer, C. Sers, 2022, medRxiv.

DelSIEVE: cell phylogeny model of single nucleotide variants and deletions from single-cell DNA sequencing data

N. Beerenwinkel, E. Szczurek, Magda Markowska, 2024, bioRxiv.

Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data

Huw A. Ogilvie, L. Nakhleh, M. Edrisi, 2022, Bioinformatics.

Somatic variant calling from single-cell DNA sequencing data

David Posada, M. Valecha, Monica Valecha, 2022, Computational and structural biotechnology journal.

Phylovar: Towards scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data

Huw A. Ogilvie, L. Nakhleh, D. Posada, 2022, bioRxiv.

NOTCH1 activation compensates BRCA1 deficiency and promotes triple-negative breast cancer formation

C. Deng, Zhengqiang Miao, Jiaolin Bao, 2020, Nature Communications.