Irit Gat-Viks

发表

EZH 2 promotes a bi-lineage identity in basal-like breast cancer cells

I. Waldhorn, I. Gat-Viks, B. Maly, 2012 .

Systematic Discovery of TLR Signaling Components Delineates Viral-Sensing Circuits

Jacob T. Robinson, Aviv Regev, Irit Gat-Viks, 2011, Cell.

The host transcriptional response to superinfection by influenza virus and streptococcus pneumonia

I. Gat-Viks, E. Bacharach, M. Mandelboim, 2022, bioRxiv.

An integrative model of cardiometabolic traits identifies two types of metabolic syndrome

L. Joosten, M. Netea, R. ter Horst, 2021, eLife.

Extracellular Matrix Proteolysis by MT1-MMP Contributes to Influenza-Related Tissue Damage and Mortality.

I. Amit, Diego Jaitin, Hadas Keren-Shaul, 2016, Cell host & microbe.

Mutations causing medullary cystic kidney disease type 1 (MCKD1) lie in a large VNTR in MUC1 missed by massively parallel sequencing

Eric S. Lander, Aviv Regev, Irit Gat-Viks, 2013, Nature Genetics.

SOX2 Is an Amplified Lineage Survival Oncogene in Lung and Esophageal Squamous Cell Carcinomas

A. Regev, P. Tamayo, W. Hahn, 2009, Nature Genetics.

Genome-wide CRISPR screen identifies host dependency factors for influenza A virus infection

Paul J. Hoover, John G Doench, N. Hacohen, 2020, Nature Communications.

Scoring clustering solutions by their biological relevance

Ron Shamir, Irit Gat-Viks, Roded Sharan, 2003, Bioinform..

Computational analysis of molecular networks: modeling and reconstruction

Irit Gat-Viks, I. Gat-Viks, Irit Gat-Viks, 2007 .

Linking traits based on their shared molecular mechanisms

Y. Oren, A. Nachshon, Amit Frishberg, 2015, eLife.

A Probabilistic Methodology for Integrating Knowledge and Experiments on Biological Networks

Ron Shamir, Amos Tanay, Irit Gat-Viks, 2006, J. Comput. Biol..

ImmQuant: a user-friendly tool for inferring immune cell-type composition from gene-expression data

Amit Frishberg, Irit Gat-Viks, Avital Brodt, 2016, Bioinform..

Digital cell quantification identifies global immune cell dynamics during influenza infection

I. Amit, Hadas Keren-Shaul, Eyal David, 2014, Molecular systems biology.

Distinct gene programs underpinning ‘disease tolerance’ and ‘resistance’ in influenza virus infection

I. Amit, N. Hacohen, M. Netea, 2022, bioRxiv.

A Faster Algorithm for Simultaneous Alignment and Folding of RNA

Ron Shamir, Michal Ziv-Ukelson, Irit Gat-Viks, 2010, J. Comput. Biol..

A Faster Algorithm for RNA Co-folding

Ron Shamir, Michal Ziv-Ukelson, Irit Gat-Viks, 2008, WABI.

Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data

Jerzy Tiuryn, Martin Vingron, Przemyslaw Biecek, 2011, BMC Bioinformatics.

Cell composition analysis of bulk genomics using single cell data

Eran Bacharach, Amit Frishberg, Irit Gat-Viks, 2019, Nature Methods.

CoD: inferring immune-cell quantities related to disease states

Amit Frishberg, Irit Gat-Viks, Yael Steuerman, 2015, Bioinform..

Stratification of Atherosclerosis based on Plasma Metabolic States.

J. Rutten, I. V. D. van den Munckhof, M. Netea, 2023, The Journal of clinical endocrinology and metabolism.

A global view of the selection forces in the evolution of yeast cis-regulation.

R. Shamir, A. Tanay, I. Gat-Viks, 2004, Genome research.

Epigenetic Changes Driven by EGFR Signaling

A. Regev, T. Peretz, I. Ben-Porath, 2011 .

A Physical and Regulatory Map of Host-Influenza Interactions Reveals Pathways in H1N1 Infection

N. Hacohen, A. Regev, D. Hill, 2009, Cell.

Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing

I. Amit, Eyal David, Merav Cohen, 2018, Cell Systems.

Significant common environmental effects on leukocyte subpopulations

I. Gat-Viks, M. Botzman, Maya Botzman, 2018, PloS one.

Pleural macrophages translocate to the lung during infection to promote improved influenza outcomes

Yael Steuerman, Andrew Nishida, James P Stumpff, 2023, Proceedings of the National Academy of Sciences of the United States of America.

Pleural macrophages promote recovery from influenza virus infection

I. Gat-Viks, Yael Steuerman, Meera G. Nair, 2022 .

Deciphering molecular circuits from genetic variation underlying transcriptional responsiveness to stimuli

Aviv Regev, Irit Gat-Viks, Nir Hacohen, 2013, Nature Biotechnology.

Regenerating the Injured Spinal Cord at the Chronic Phase by Engineered iPSCs‐Derived 3D Neuronal Networks

Y. Assaf, T. Dvir, I. Gat-Viks, 2022, Advanced science.

Dissecting the Effect of Genetic Variation on the Hepatic Expression of Drug Disposition Genes across the Collaborative Cross Mouse Strains

Juliane C. Dohm, R. Shamir, R. Mott, 2016, Front. Genet..

Predicting brain metastasis in early stage non-small cell lung cancer patients by gene expression profiling

M. Perelman, I. Barshack, S. Izraeli, 2020, Translational lung cancer research.

The pathophysiology of sepsis and precision-medicine-based immunotherapy

P. Pickkers, A. Aschenbrenner, E. Giamarellos‐Bourboulis, 2024, Nature immunology.

Reconstructing the Molecular Function of Genetic Variation in Regulatory Networks

Chun Jimmie Ye, Roni Wilentzik, I. Gat-Viks, 2017, Genetics.

A statistical framework for revealing signaling pathways perturbed by DNA variants

Irit Gat-Viks, Roni Wilentzik, Roni Wilentzik, 2015, Nucleic acids research.

A minimum-labeling approach for reconstructing protein networks across multiple conditions

Irit Gat-Viks, Arnon Mazza, Roded Sharan, 2013, Algorithms for Molecular Biology.

Refinement and expansion of signaling pathways: the osmotic response network in yeast.

R. Shamir, I. Gat-Viks, Irit Gat-Viks, 2007, Genome research.

Personalized Hydrogels for Engineering Diverse Fully Autologous Tissue Implants

Assaf Shapira, Nadav Noor, Tal Dvir, 2018, Advanced materials.

Linking Cell Dynamics With Gene Coexpression Networks to Characterize Key Events in Chronic Virus Infections

S. Heath, G. Bocharov, A. Meyerhans, 2019, Front. Immunol..

Leveraging the cell lineage to predict cell-type specificity of regulatory variation from bulk genomics.

F. Iraqi, I. Gat-Viks, E. Bacharach, 2021, Genetics.

Exploring Neural Networks and Related Visualization Techniques in Gene Expression Data

Irit Gat-Viks, Roni Wilentzik Müller, I. Gat-Viks, 2020, Frontiers in Genetics.

Towards personalized medicine: a scoping review of immunotherapy in sepsis

W. Wiersinga, A. Aschenbrenner, E. Giamarellos‐Bourboulis, 2024, Critical care.

Exploiting Gene-Expression Deconvolution to Probe the Genetics of the Immune System

Irit Gat-Viks, Yael Steuerman, I. Gat-Viks, 2016, PLoS Comput. Biol..