Robert Clarke

发表

debCAM: a bioconductor R package for fully unsupervised deconvolution of complex tissues

Yue Wang, Niya Wang, Lulu Chen, 2020, Bioinform..

Data-driven detection of subtype-specific differentially expressed genes

Yue Wang, David M. Herrington, Lulu Chen, 2019, bioRxiv.

A systems biology approach to discovering pathway signaling dysregulation in metastasis

Yue Wang, Robert Clarke, Pavel Kraikivski, 2020, Cancer and Metastasis Reviews.

BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method

Jianhua Xuan, Li Chen, Ayesha N. Shajahan, 2015, Bioinform..

BICORN: An R package for integrative inference of de novo cis-regulatory modules

Jianhua Xuan, Xi Chen, Jinghua Gu, 2020, Scientific Reports.

DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency

Xiao Wang, Jianhua Xuan, Jinghua Gu, 2017, Bioinform..

DDN: a caBIG® analytical tool for differential network analysis

Subha Madhavan, Huai Li, Eric P. Hoffman, 2011, Bioinform..

CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines

Jianhua Xuan, Leena Hilakivi-Clarke, Robert Clarke, 2017, PloS one.

SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data

Xiao Wang, Jianhua Xuan, Leena Hilakivi-Clarke, 2017, Bioinform..

CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large‐scale ChIP‐seq and time‐course RNA‐seq data

Xiao Wang, Jianhua Xuan, Jinghua Gu, 2018, Bioinform..

Author Correction: BICORN: An R package for integrative inference of de novo cis-regulatory modules

Jianhua Xuan, Jinghua Gu, Leena Hilakivi-Clarke, 2020, Scientific reports.

Statistical Identification of Co-regulatory Gene Modules using Multiple ChIP-Seq Experiments

Jianhua Xuan, Xi Chen, Ayesha N. Shajahan, 2014, BIOINFORMATICS.