A. Allen

发表

Mapping eQTL by leveraging multiple tissues and DNA methylation

Kouros Owzar, Andrew S. Allen, Chaitanya R. Acharya, 2016, BMC Bioinformatics.

Targeted long-read sequencing identifies missing disease-causing variation.

William H. Majoros, Karynne E. Patterson, Timothy E. Reddy, 2021, American journal of human genetics.

Sub-genic intolerance, ClinVar, and the epilepsies: A whole-exome sequencing study of 29,165 individuals.

Ethan M. Goldberg, Joshua E. Motelow, I. Scheffer, 2021, American journal of human genetics.

Diverse genetic causes of polymicrogyria with epilepsy

I. Scheffer, H. Mefford, E. Eichler, 2021, Epilepsia.

An Exome Sequencing Study to Assess the Role of Rare Genetic Variation in Pulmonary Fibrosis

D. Goldstein, A. Allen, C. Malone, 2017, American journal of respiratory and critical care medicine.

Somatic uniparental disomy of Chromosome 16p in hemimegalencephaly

A. Allen, P. Crino, C. Hulette, 2017, Cold Spring Harbor molecular case studies.

Orion: Detecting regions of the human non-coding genome that are intolerant to variation using population genetics

William H. Majoros, Ayal B. Gussow, William H Majoros, 2017, PloS one.

Genic Intolerance to Functional Variation and the Interpretation of Personal Genomes

D. Goldstein, A. Allen, S. Petrovski, 2013, PLoS genetics.

Fast and Robust Association Tests for Untyped SNPs in Case-Control Studies

G. Satten, A. Allen, M. Epstein, 2010, Human Heredity.

Robust estimation and testing of haplotype effects in case‐control studies

G. Satten, A. Allen, A. Allen, 2008, Genetic epidemiology.

Sequencing studies in human genetics: design and interpretation

D. Goldstein, E. H. Margulies, Jonathan E. M. Keebler, 2013, Nature Reviews Genetics.

Genetic Polymorphisms of CFH and ARMS2 Do Not Predict Response to Antioxidants and Zinc in Patients with Age-Related Macular Degeneration: Independent Statistical Evaluations of Data from the Age-Related Eye Disease Study.

K. Baggerly, A. Vickers, Ying Wang, 2017, Ophthalmology.

Exome sequencing in amyotrophic lateral sclerosis identifies risk genes and pathways

Brittany N. Lasseigne, W. Chung, D. Goldstein, 2015, Science.

Ultra-rare genetic variation in common epilepsies: a case-control sequencing study

Michael R. Johnson, I. Scheffer, H. Mefford, 2017, The Lancet Neurology.

The genetics of neuropsychiatric diseases: looking in and beyond the exome.

D. Goldstein, B. Neale, A. Allen, 2015, Annual review of neuroscience.

An Evaluation of Copy Number Variation Detection Tools from Whole‐Exome Sequencing Data

Xiaolin Zhu, Yongzhuang Liu, Hongzhe Guo, 2014, Human mutation.

De novo mutations in the classic epileptic encephalopathies

Michael R. Johnson, I. Scheffer, H. Mefford, 2013, Nature.

Genome-wide Analyses Identify KIF5A as a Novel ALS Gene in and for Therapeutic

Timothy A. Miller, Denis C. Bauer, Shankaracharya, 2018 .

Transversions have larger regulatory effects than transitions

Ian C. McDowell, Timothy E. Reddy, A. Allen, 2017, BMC Genomics.

General Marginal Regression Models for the Joint Modeling of Event Frequency and Correlated Severities with Applications to Clinical Trials

Andrew S. Allen, Huiman X. Barnhart, H. Barnhart, 2005, Journal of Data Science.

Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.

A. Allen, W. Scott, C. Nelson, 2016, The Journal of infectious diseases.

Rare-variant collapsing analyses for complex traits: guidelines and applications

D. Goldstein, A. Allen, S. Petrovski, 2019, Nature Reviews Genetics.

Testing for risk and protective trends in genetic analyses of HIV acquisition.

D. Goldstein, A. Allen, P. Shea, 2015, Biostatistics.

The Intolerance of Regulatory Sequence to Genetic Variation Predicts Gene Dosage Sensitivity

Ayal B. Gussow, D. Goldstein, A. Allen, 2015, PLoS genetics.

Summary of contributions to GAW15 Group 13: candidate gene association studies

A. Allen, M. de Andrade, A. Allen, 2007 .

Loss of tubulin deglutamylase CCP1 causes infantile‐onset neurodegeneration

D. Goldstein, A. Allen, T. Strom, 2018, The EMBO journal.

Exome-Based Rare-Variant Analyses in CKD.

D. Goldstein, A. Allen, S. Petrovski, 2019, Journal of the American Society of Nephrology : JASN.

Joint Models for Toxicology Studies with Dose‐Dependent Number of Implantations

Huiman X Barnhart, Andrew S Allen, A. Allen, 2002, Risk analysis : an official publication of the Society for Risk Analysis.

Ancestry adjustment improves genome-wide estimates of regional intolerance

D. Goldstein, A. Allen, R. Dhindsa, 2020, bioRxiv.

Improved Pathogenic Variant Localization using a Hierarchical Model of Sub-regional Intolerance

D. Goldstein, A. Allen, T. Hayeck, 2018, bioRxiv.

The intolerance to functional genetic variation of protein domains predicts the localization of pathogenic mutations within genes

Ayal B. Gussow, D. Goldstein, A. Allen, 2016, Genome Biology.

Genome-wide association study of suicidal ideation emerging during citalopram treatment of depressed outpatients

F. McMahon, A. Allen, G. Laje, 2009, Pharmacogenetics and genomics.

Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding

Raluca Gordân, Andrew S. Allen, Jingkang Zhao, 2017, RECOMB.

Human genome-wide measurement of drug-responsive regulatory activity

Ian C. McDowell, William H. Majoros, Christopher M. Vockley, 2018, Nature Communications.

Coding and noncoding variants in EBF3 are involved in HADDS and simplex autism

Evin M. Padhi, Jeffrey K. Ng, D. Dickel, 2021, Human genomics.

De Novo Mutation in an Enhancer of EBF3 in simplex autism

Evin M. Padhi, Jeffrey K. Ng, D. Dickel, 2020, bioRxiv.

A Regression‐based Association Test for Case‐control Studies that Uses Inferred Ancestral Haplotype Similarity

G. Satten, A. Allen, J. Tzeng, 2009, Annals of human genetics.

Simple methods for assessing haplotype‐environment interactions in case‐only and case‐control studies

L C Kwee, M P Epstein, A K Manatunga, 2007, Genetic epidemiology.

Retrospective haplotype clustering methods for detecting haplotypes effects and haplotype-environment interactions

G. Satten, M. Epstein, J. Kao, 2008 .

De Novo Mutations in SLC1A2 and CACNA1A Are Important Causes of Epileptic Encephalopathies.

Michael R. Johnson, G. Carvill, I. Scheffer, 2016, American journal of human genetics.

Causal Genetic Variants in Stillbirth.

Christie M. Buchovecky, D. Goldstein, C. Parker, 2020, The New England journal of medicine.

De novo and inherited private variants in MAP1B in periventricular nodular heterotopia

C. Walsh, A. Allen, S. Robertson, 2018, PLoS genetics.

A case-control collapsing analysis identifies epilepsy genes implicated in trio sequencing studies focused on de novo mutations

I. Scheffer, D. Goldstein, A. Allen, 2017, PLoS genetics.

Incorporating prior information into signal-detection analyses across biologically informed gene-sets

D. Goldstein, A. Allen, S. Gelfman, 2019, bioRxiv.

A simple and improved correction for population stratification in case-control studies.

Michael P Epstein, Glen A Satten, Andrew S Allen, 2007, American journal of human genetics.

Incorporating Functional Information in Tests of Excess De Novo Mutational Load.

Yujun Han, Kouros Owzar, Andrew S Allen, 2015, American journal of human genetics.

A Bayesian hierarchical model to estimate DNA methylation conservation in colorectal tumors

Darryl Shibata, Andrew S. Allen, Kevin A. Murgas, 2021, Bioinform..

Phenotypic analysis of 303 multiplex families with common epilepsies

I. Scheffer, H. Mefford, D. Goldstein, 2017, Brain : a journal of neurology.

A genome-wide association study of variants associated with acquisition of Staphylococcus aureus bacteremia in a healthcare setting

Kimberly Pelak, Andrew S Allen, L. Cowell, 2014, BMC Infectious Diseases.

Haplotype Association Mapping Identifies a Candidate Gene Region in Mice Infected With Staphylococcus aureus

L. Cowell, A. Allen, W. Scott, 2012, G3: Genes | Genomes | Genetics.

A new approach for rare variation collapsing on functional protein domains implicates specific genic regions in ALS

Brittany N. Lasseigne, D. Goldstein, R. Myers, 2019, Genome research.

Regional Collapsing of Rare Variation Implicates Specific Genic Regions in ALS

Brittany N. Lasseigne, D. Goldstein, R. Myers, 2018, bioRxiv.

Localizing Rare-Variant Association Regions via Multiple Testing Embedded in an Aggregation Tree

A. Allen, K. Owzar, Jichun Xie, 2022 .

High‐throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE

Mark Yandell, William H. Majoros, Doreen Ware, 2016, Bioinform..

Robust Regression Analysis of Copy Number Variation Data based on a Univariate Score

G. Satten, A. Allen, S. Warren, 2014, PloS one.

Somatic SLC35A2 variants in the brain are associated with intractable neocortical epilepsy

C. Schevon, A. Allen, G. Mckhann, 2018, Annals of neurology.

Testing Gene–Treatment Interactions in Pharmacogenetic Studies

A. Allen, Min He, A. Allen, 2010, Journal of biopharmaceutical statistics.

Determinants of exhaled nitric oxide levels in healthy, nonsmoking African American adults.

A. Allen, M. Levesque, D. Hauswirth, 2008, The Journal of allergy and clinical immunology.

Genetic variation in HTR2A influences serotonin transporter binding potential as measured using PET and [11C]DASB.

Francis J McMahon, Dara M Cannon, Andrew S Allen, 2010, The international journal of neuropsychopharmacology.

Genome-wide association study (GWAS) of human host factors influencing viral severity of herpes simplex virus type 2 (HSV-2)

D. Goldstein, A. Allen, A. Wald, 2017, Genes & Immunity.