A. Aditham

Short tandem repeats bind transcription factors to tune eukaryotic gene expression

A. Kundaje, J. Zeitlinger, R. Gordân, 2022, bioRxiv.

d-Amino Acid Chemical Reporters Reveal Peptidoglycan Dynamics of an Intracellular Pathogen

C. Bertozzi, F. Cava, Arjun K. Aditham, 2012, ACS chemical biology.

Functional map of SARS-CoV-2 3CL protease reveals tolerant and immutable sites

Fereshteh Fallah Atanaki, Seo Jung Hong, S. Goff, 2022, Cell Host & Microbe.

High-throughput thermodynamic and kinetic measurements of transcription factor/DNA mutations reveal how conformational heterogeneity can shape motif selectivity

N. DelRosso, P. Suzuki, A. Aditham, 2023, bioRxiv.

The Functional Landscape of SARS-CoV-2 3CL Protease

Fereshteh Fallah Atanaki, Seo Jung Hong, S. Goff, 2022, bioRxiv.

High-Throughput Affinity Measurements of Transcription Factor and DNA Mutations Reveal Affinity and Specificity Determinants.

D. Mokhtari, P. Fordyce, Arjun K. Aditham, 2020, Cell systems.

High-throughput binding affinity measurements for mutations spanning a transcription factor-DNA interface reveal affinity and specificity determinants

D. Mokhtari, P. Fordyce, Arjun K. Aditham, 2020, bioRxiv.

BET-seq: Binding energy topographies revealed by microfluidics and high-throughput sequencing.

Tyler C. Shimko, P. Fordyce, Arjun K. Aditham, 2018, Methods in cell biology.

Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding

Polly M. Fordyce, Yaron Orenstein, Tyler C. Shimko, 2017, Proceedings of the National Academy of Sciences.