Khader Shameer

发表

Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment

Joel Dudley, Krishna R. Kalari, Khader Shameer, 2016, Briefings Bioinform..

Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning

Rong Chen, Riccardo Miotto, Marcus A. Badgeley, 2017, Briefings Bioinform..

A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families

Khader Shameer, Ramanathan Sowdhamini, Venkatraman S. Gowri, 2010, 2010 IEEE International Conference on Data Mining Workshops.

Mammography Assessment using Multi-Scale Deep Classifiers pdf

Lakshminarayanan Subramanian, Khader Shameer, Ulzee An, 2018, ArXiv.

Poster: HORIBALFRE: Higher Order Residue Interactions Based ALgorithm for Fold REcognition

Khader Shameer, Ramanathan Sowdhamini, Pandurangan Sundaramurthy, 2011, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).

PURE: A webserver for the prediction of domains in unassigned regions in proteins

Khader Shameer, Ramanathan Sowdhamini, Chilamakuri Chandra Sekhar Reddy, 2008, BMC Bioinformatics.

An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships

Li Li, Rong Chen, Benjamin S. Glicksberg, 2014, Pacific Symposium on Biocomputing.

HARMONY: a server for the assessment of protein structures

Narayanaswamy Srinivasan, Khader Shameer, Ramanathan Sowdhamini, 2006, Nucleic Acids Res..

3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach

Khader Shameer, Ramanathan Sowdhamini, Kumar Gaurav, 2009, BioData Mining.

Prioritizing Small Molecule as Candidates for Drug Repositioning using Machine Learning

Kipp W. Johnson, Benjamin S. Glicksberg, Joel Dudley, 2018, bioRxiv.

Predictive Modeling of Hospital Readmission Rates Using Electronic Medical Record-Wide Machine Learning: A Case-Study Using Mount Sinai Heart Failure Cohort

Li Li, Riccardo Miotto, Kipp W. Johnson, 2017, PSB.

Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses

Lakshminarayanan Subramanian, Kipp W. Johnson, Khader Shameer, 2019, Briefings Bioinform..

CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis

Marcus A. Badgeley, Benjamin S. Glicksberg, Joel Dudley, 2018, Bioinform..

fragilityindex: An R Package for Statistical Fragility Estimates in Biomedicine

Kipp W. Johnson, Benjamin S. Glicksberg, Khader Shameer, 2019, bioRxiv.

Causal inference on electronic health records to assess blood pressure treatment targets: An application of the parametric g formula

Kipp W. Johnson, Benjamin S. Glicksberg, Joel Dudley, 2018, PSB.

In silico methods for drug repurposing and pharmacology

Khader Shameer, Joel T Dudley, Brian A Kidd, 2016, Wiley interdisciplinary reviews. Systems biology and medicine.

PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes

Khader Shameer, Ramanathan Sowdhamini, Lalima L. Madan, 2010, BMC Bioinformatics.

Gene expression profiling of peripheral blood mononuclear cells in the setting of peripheral arterial disease

Khader Shameer, Iftikhar J. Kullo, Keyue Ding, 2012, Journal of Clinical Bioinformatics.

3DSwap: curated knowledgebase of proteins involved in 3D domain swapping

Khader Shameer, Ramanathan Sowdhamini, Prashant Shingate, 2011, Database J. Biol. Databases Curation.

HORI: a web server to compute Higher Order Residue Interactions in protein structures

Khader Shameer, Ramanathan Sowdhamini, Pandurangan Sundaramurthy, 2010, BMC Bioinformatics.

Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams

Riccardo Miotto, Marcus A. Badgeley, Benjamin S. Glicksberg, 2016, Briefings Bioinform..

Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks

Li Li, Rong Chen, Marcus A. Badgeley, 2016, Bioinform..

Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining

Li Li, Kipp W. Johnson, Benjamin S. Glicksberg, 2018, BMC Medical Informatics and Decision Making.

Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome

Khader Shameer, Ramanathan Sowdhamini, R. Sowdhamini, 2012, Journal of Clinical Bioinformatics.

Automated disease cohort selection using word embeddings from Electronic Health Records

Li Li, Rong Chen, Riccardo Miotto, 2018, PSB.

High Precision Mammography Lesion Identification From Imprecise Medical Annotations

Lakshminarayanan Subramanian, Khader Shameer, Ulzee An, 2021, Frontiers in Big Data.

Clinical trials, real-world evidence, and digital medicine

Khader Shameer, Richard Dearden, Glynn Dennis, 2021 .

Data types and resources

Khader Shameer, Krishna C. Bulusu, Stephanie Kay Ashenden, 2021 .

TrialGraph: Machine Intelligence Enabled Insight from Graph Modelling of Clinical Trials pdf

Stefano Bragaglia, Khader Shameer, Claire R. Donoghue, 2021, ArXiv.

Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.

Christopher G Chute, Joshua C Denny, Khader Shameer, 2011, American journal of human genetics.

A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects

Christopher G. Chute, Marylyn D. Ritchie, Joshua C. Denny, 2013, Human Genetics.

Abstract 19489: Pharmacological Factors Associated With Congestive Heart Failure Hospital Readmission: A Case-Study Using 15,768 Heart Failure Patients From Two Health Systems

Riccardo Miotto, Kipp W. Johnson, Alexandre Yahi, 2016 .

Systems Medicine Approaches to Improving Understanding, Treatment, and Clinical Management of Neuroendocrine Prostate Cancer.

Li Li, Khader Shameer, Ben Readhead, 2016, Current pharmaceutical design.

STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice

Khader Shameer, Ramanathan Sowdhamini, Oommen K. Mathew, 2013, Plant & cell physiology.

Computational and experimental advances in drug repositioning for accelerated therapeutic stratification.

Khader Shameer, Ben Readhead, Joel T Dudley, 2015, Current topics in medicinal chemistry.

Machine learning in cardiovascular medicine: are we there yet?

Kipp W. Johnson, Khader Shameer, Joel T Dudley, 2018, Heart.

Enabling Precision Cardiology Through Multiscale Biology and Systems Medicine

Kipp W. Johnson, Khader Shameer, Ben Readhead, 2017, JACC. Basic to translational science.

EHDViz: clinical dashboard development using open-source technologies

Marcus A. Badgeley, Khader Shameer, Max S. Tomlinson, 2016, BMJ Open.

Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses

Khader Shameer, Ramanathan Sowdhamini, Naresh Doni Jayavelu, 2015, Nucleic acids research.