Anand Rampadarath

BioSimulators: a central registry of simulation engines and services for recommending specific tools

Jonathan R. Karr, Frank T. Bergmann, Ryan K. Spangler, 2022, Nucleic Acids Res..

Best Practices for Making Reproducible Biochemical Models.

Jonathan R. Karr, Herbert M Sauro, Jonathan R Karr, 2020, Cell systems.

Automated Execution of Simulation Studies in Systems Medicine Using SED-ML and COMBINE Archive

A. K. Rampadarath, D. P. Nickerson, D. Nickerson, 2021 .

Building a search tool for compositely annotated entities using Transformer-based approach: Case study in Biosimulation Model Search Engine (BMSE)

Yuda Munarko, Y. Munarko, A. Rampadarath, 2023, F1000Research.

CASBERT: BERT-based retrieval for compositely annotated biosimulation model entities

D. Nickerson, Yuda Munarko, Y. Munarko, 2022, bioRxiv.

NLIMED: Natural Language Interface for Model Entity Discovery in Biosimulation Model Repositories

D. Nickerson, J. Gennari, M. Neal, 2022, Frontiers in Physiology.

libOmexMeta: enabling semantic annotation of models to support FAIR principles

David P. Nickerson, John H. Gennari, Herbert M. Sauro, 2021, Bioinform..

Improving reproducibility in computational biology research

David P. Nickerson, Jason A. Papin, Herbert M. Sauro, 2020, PLoS Comput. Biol..